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rnhA rnhA guaD guaD CBO1219 CBO1219 CBO1144 CBO1144 CBO0928 CBO0928 CBO0767A CBO0767A CBO0567 CBO0567 CBO0253 CBO0253 surE surE CBO0037 CBO0037 xseA xseA xseB xseB CBO2373 CBO2373 deoC deoC CBO3625 CBO3625 CBO3535 CBO3535 CBO3506 CBO3506 rdgB rdgB dut dut cdd cdd dgt dgt csrA csrA CBO2629A CBO2629A CBO2515 CBO2515 rnhB rnhB pnpA pnpA rny rny mtnN mtnN
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
rnhARibonuclease Hi; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (149 aa)
guaDGuanine deaminase. (157 aa)
CBO1219Putative hydrolase; Belongs to the 5'(3')-deoxyribonucleotidase family. (194 aa)
CBO1144Putative phage-related protein. (109 aa)
CBO0928Putative phosphohydrolase. (202 aa)
CBO0767AConserved hypothetical protein. (153 aa)
CBO0567Putative metal-dependent phosphohydrolase. (214 aa)
CBO0253Cytidine deaminase; Similar to Bacillus caldolyticus cytidine deaminase Cdd SWALL:Q9R2S1 (EMBL:AJ237979) (132 aa) fasta scores: E(): 1.2e-05, 30.4 38d in 125 aa, and to Aspergillus terreus blasticidin-S deaminase Bsd SWALL:BSD_ASPTE (SWALL:P78986) (130 aa) fasta scores: E(): 3.9e-05, 31.49 id in 127 aa. (125 aa)
surEAcid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (252 aa)
CBO0037Putative NUDIX-family hydrolase; Similar to Clostridium tetani predicted NADH pyrophosphatase ctc00069 SWALL:Q899U7 (EMBL:AE015936) (175 aa) fasta scores: E(): 5.5e-45, 70 38d in 160 aa, and to Clostridium acetobutylicum N-terminal Zn-ribbon domain and C-terminal MutT domain, yjad ortholog cac0145 SWALL:Q97MP7 (EMBL:AE007526) (174 aa) fasta scores: E(): 4.7e-34,54.37 38d in 160 aa. (162 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (401 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (71 aa)
CBO2373Hypothetical phage protein. (120 aa)
deoCPutative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (212 aa)
CBO3625Conserved hypothetical protein. (105 aa)
CBO3535MazG family protein; Similar over its C-terminal region to Escherichia coli, and Escherichia coli O157:H7 MazG protein or b2781 or z4096 or ecs3641 SWALL:MAZG_ECOLI (SWALL:P33646) (263 aa) fasta scores: E(): 7.8e-33, 41.96 38d in 255 aa, and similar over its entire length to Clostridium tetani conserved protein ctc00198 SWALL:Q899H9 (EMBL:AE015936) (491 aa) fasta scores: E(): 3.4e-118, 66.18 38d in 482 aa. (485 aa)
CBO3506Conserved hypothetical protein. (132 aa)
rdgBConserved hypothetical protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (199 aa)
dutPutative deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. (208 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (132 aa)
dgtPutative metal dependent phosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily. (342 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (72 aa)
CBO2629APutative V-type sodium ATP synthase subunit G. (108 aa)
CBO2515Conserved hypothetical protein. (292 aa)
rnhBPutative ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (269 aa)
pnpAPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (702 aa)
rnyPutative membrane protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (513 aa)
mtnN5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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