STRINGSTRING
CBO3579 CBO3579 CBO0010 CBO0010 CBO0039 CBO0039 CBO0089 CBO0089 queG queG rnfC rnfC rnfB rnfB CBO0879 CBO0879 nifJ1 nifJ1 CBO1332 CBO1332 CBO1341 CBO1341 CBO1508 CBO1508 asrC-2 asrC-2 CBO1830 CBO1830 CBO1832 CBO1832 hymC hymC hymB hymB fesA fesA CBO2222 CBO2222 CBO2223 CBO2223 nifJ2 nifJ2 CBO2807 CBO2807 ygfK ygfK ribB ribB CBO3184 CBO3184 CBO3192 CBO3192 etfA2 etfA2 CBO3302 CBO3302 CBO3371 CBO3371 CBO3424 CBO3424 CBO3550 CBO3550
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBO3579Putative dehydratase/lyase activating enzyme. (279 aa)
CBO0010Conserved hypothetical protein; Similar to Methanobacterium thermoautotrophicum hypothetical protein Mth772 SWALL:O26866 (EMBL:AE000856) (375 aa) fasta scores: E(): 2.1e-24, 31.88 38d in 345 aa,and to Methanosarcina mazei iron-sulfur cluster-binding protein mm0611 SWALL:Q8PZ83 (EMBL:AE013286) (376 aa) fasta scores: E(): 7.6e-22, 31.37 38d in 357 aa. (354 aa)
CBO0039Putative 4Fe-4S ferredoxin; Similar to Clostridium tetani putative polyferredoxin ctc00067 SWALL:Q899U9 (EMBL:AE015936) (258 aa) fasta scores: E(): 2.3e-44, 50.95 38d in 263 aa, and to Clostridium acetobutylicum polyferredoxin cac2657 SWALL:Q97FS0 (EMBL:AE007763) (249 aa) fasta scores: E(): 4.7e-20, 35.65 38d in 258 aa. (262 aa)
CBO0089Ferredoxin; Similar to Thermotoga maritima ferredoxin Fdx or tm0927 SWALL:FER_THEMA (SWALL:P46797) (60 aa) fasta scores: E(): 0.00016, 38.98 38d in 59 aa, and to Clostridium perfringens ferredoxin Fer or cpe2511 SWALL:Q8XHH3 (EMBL:AP003194) (62 aa) fasta scores: E(): 3.4e-07, 45.76 38d in 59 aa. (63 aa)
queGSimilar to Clostridium tetani iron-sulfur cluster-binding protein ctc00352 SWALL:Q898T9 (EMBL:AE015937) (327 aa) fasta scores: E(): 2.3e-75,61.12 38d in 319 aa. (321 aa)
rnfCElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (439 aa)
rnfBElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (277 aa)
CBO0879Putative iron-sulfur cluster-binding protein. (268 aa)
nifJ1Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d). (1172 aa)
CBO1332Putative oxidoreductase, electron transfer subunit. (147 aa)
CBO1341Putative iron-sulfur cluster binding protein. (425 aa)
CBO1508Putative oxidoreductase. (378 aa)
asrC-2Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (284 aa)
CBO1830Putative hydrogenase; This CDS is also similar to CBO1832 (49.914 38d. in 579 aa overlap). (574 aa)
CBO1832Putative hydrogenase; This CDS is also similar to CBO1830 (49.914 38d. in 579 aa overlap). (579 aa)
hymCPutative catalytic subunit of iron-only hydrogenase. (577 aa)
hymBPutative electron-transferring subunit of iron-only hydrogenase. (631 aa)
fesAPutative ferredoxin. (273 aa)
CBO22224Fe-4S cluster containing ParA family ATPase protein. (281 aa)
CBO22234Fe-4S cluster containing ParA family ATPase protein. (276 aa)
nifJ2Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d). (1192 aa)
CBO2807Putative iron-sulfur-binding protein. (213 aa)
ygfKPyridine nucleotide-disulfide oxidoreductase. (1005 aa)
ribBPfam match to entry PF00926 DHBP_synthase,3,4-dihydroxy-2-butanone 4-phosphate synthase, score 377.0, E-value 2e-110. (247 aa)
CBO3184Putative pyruvate formate-lyase 2 activating enzyme. (252 aa)
CBO3192Putative ferredoxin. (64 aa)
etfA2Electron transfer flavoprotein alpha-subunit; N-terminal extension relative to homologues. (398 aa)
CBO3302Putative iron-dependent hydrogenase. (498 aa)
CBO3371Putative oxidoreductase. (336 aa)
CBO3424Putative ferredoxin subunit of pyruvate:flavodoxin oxidoreductase. (69 aa)
CBO3550Iron-only hydrogenase. (449 aa)
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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