(7 nodes) Mixed, incl. Small ribosomal subunit, and Translation elongation factor EF1B/ribosomal protein S6 network (Rippkaea orientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsI	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (135 aa)
	rpsK	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (130 aa)
	rpsF	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (124 aa)
	rpsJ	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa)
	rpsL	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. (125 aa)
	rpsP	PFAM: ribosomal protein S16; KEGG: syn:ssr0482 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (82 aa)
	rpsB	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (268 aa)

Your Current Organism:

Rippkaea orientalis

NCBI taxonomy Id: 41431
Other names: Cyanothece sp. PCC 8801, R. orientalis PCC 8801, Rippkaea orientalis PCC 8801, Synechococcus sp. PCC 8801, Synechococcus sp. RF-1

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsF	PCC8801_2578	PCC8801_0713	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsB	rpsI	PCC8801_2578	PCC8801_0224	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	PCC8801_2578	PCC8801_1535	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsB	rpsK	PCC8801_2578	PCC8801_0229	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsB	rpsL	PCC8801_2578	PCC8801_1539	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsB	rpsP	PCC8801_2578	PCC8801_1956	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S16; KEGG: syn:ssr0482 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsF	rpsB	PCC8801_0713	PCC8801_2578	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsF	rpsI	PCC8801_0713	PCC8801_0224	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsF	rpsJ	PCC8801_0713	PCC8801_1535	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsF	rpsK	PCC8801_0713	PCC8801_0229	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsF	rpsL	PCC8801_0713	PCC8801_1539	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsF	rpsP	PCC8801_0713	PCC8801_1956	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	PFAM: ribosomal protein S16; KEGG: syn:ssr0482 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	PCC8801_0224	PCC8801_2578	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsF	PCC8801_0224	PCC8801_0713	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsI	rpsJ	PCC8801_0224	PCC8801_1535	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsI	rpsK	PCC8801_0224	PCC8801_0229	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsI	rpsL	PCC8801_0224	PCC8801_1539	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsI	rpsP	PCC8801_0224	PCC8801_1956	PFAM: ribosomal protein S9; KEGG: syn:sll1822 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	PFAM: ribosomal protein S16; KEGG: syn:ssr0482 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsJ	rpsB	PCC8801_1535	PCC8801_2578	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: ribosomal protein S2; KEGG: npu:Npun_R5570 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsJ	rpsF	PCC8801_1535	PCC8801_0713	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999

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