STRINGSTRING
dna2 dna2 LOC111237687 LOC111237687 rad54b rad54b Mcm9 Mcm9 exd2 exd2 cdc6 cdc6 orc1 orc1 rad51 rad51 msh5 msh5 telo2 telo2 orc2 orc2 dbf4 dbf4 RTEL1 RTEL1 atad5 atad5 msh4 msh4 gins3 gins3 tipin tipin pola1 pola1 cdc45 cdc45 chtf8 chtf8 pcna pcna msh3 msh3 mcm7 mcm7 mlh3 mlh3 gins1 gins1 mad2l2 mad2l2 paxip1 paxip1 rad9b rad9b timeless timeless tdrd3 tdrd3 mcm6 mcm6 mlh1 mlh1 pms2 pms2 meiob meiob msh6 msh6 rev1 rev1 Rbbp8 Rbbp8 CDCA7L CDCA7L pms1 pms1 mcm3 mcm3 dmc1 dmc1 rad51d rad51d rad17 rad17 top3b top3b mcm2 mcm2 rpa2 rpa2 pold3 pold3 ENSSDUP00000014088 ENSSDUP00000014088 pole4 pole4 rev3l rev3l topbp1 topbp1 xrcc2 xrcc2 blm blm LOC111228832 LOC111228832 gmnn gmnn ENSSDUP00000015520 ENSSDUP00000015520 cdc7 cdc7 polh polh atm atm ENSSDUP00000016000 ENSSDUP00000016000 rpa1 rpa1 atr atr pif1 pif1 ddx11 ddx11 rpa3 rpa3 pole pole orc4 orc4 ENSSDUP00000018183 ENSSDUP00000018183 MCMDC2 MCMDC2 bard1 bard1 rfc3 rfc3 mcm10 mcm10 rad9a rad9a fbh1 fbh1 pole2 pole2 rad52 rad52 polk polk msh2 msh2 cdt1 cdt1 pola2 pola2 rad1 rad1 recql5 recql5 RPA1 RPA1 hus1 hus1 dscc1 dscc1 xrcc3 xrcc3 ENSSDUP00000023101 ENSSDUP00000023101 pold1 pold1 chtf18 chtf18 rfc5 rfc5 wdhd1 wdhd1 mcm5 mcm5 orc3 orc3 fen1 fen1 slf1 slf1 mcm4 mcm4 mcmbp mcmbp rmi2 rmi2 rhno1 rhno1 top3a top3a rad54l rad54l tp53bp1 tp53bp1 LOC111235454 LOC111235454 orc5 orc5 ENSSDUP00000027057 ENSSDUP00000027057 ENSSDUP00000027074 ENSSDUP00000027074 gins2 gins2 pole3 pole3 gins4 gins4 CLSPN CLSPN mcm8 mcm8 rad50 rad50 lig1 lig1 atrip atrip mre11 mre11 cdca7 cdca7 ENSSDUP00000029806 ENSSDUP00000029806 brca1 brca1 pold2 pold2 exo1 exo1 rmi1 rmi1 poli poli rfc1 rfc1 prim1 prim1 rfc4 rfc4 rfc2 rfc2 mcph1 mcph1 MPHOSPH9 MPHOSPH9 prim2 prim2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dna2DNA replication helicase/nuclease 2. (1406 aa)
LOC111237687ATPase family AAA domain containing 5b. (887 aa)
rad54bRAD54 homolog B. (952 aa)
Mcm9Uncharacterized protein. (108 aa)
exd2Exonuclease 3'-5' domain containing 2. (625 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (571 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (832 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (389 aa)
msh5MutS homolog 5. (825 aa)
telo2TEL2, telomere maintenance 2, homolog (S. cerevisiae). (840 aa)
orc2Origin recognition complex, subunit 2. (594 aa)
dbf4DBF4 zinc finger. (626 aa)
RTEL1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1035 aa)
atad5ATPase family AAA domain containing 5a. (1852 aa)
msh4MutS homolog 4. (819 aa)
gins3GINS complex subunit 3. (211 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (330 aa)
pola1DNA polymerase. (1474 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (576 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (106 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
msh3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1191 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
mlh3MutL homolog 3 (E. coli). (1176 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (196 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
paxip1PAX interacting (with transcription-activation domain) protein 1. (1142 aa)
rad9bRAD9 checkpoint clamp component B. (405 aa)
timelessTimeless circadian clock. (1255 aa)
tdrd3Tudor domain containing 3. (787 aa)
mcm6DNA helicase; Belongs to the MCM family. (815 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (743 aa)
pms2PMS1 homolog 2, mismatch repair system component. (865 aa)
meiobMethionine sulfoxide reductase B1b. (472 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1357 aa)
rev1REV1 DNA directed polymerase. (1431 aa)
Rbbp8SAE2 domain-containing protein. (86 aa)
CDCA7Lzf-4CXXC_R1 domain-containing protein. (411 aa)
pms1PMS1 homolog 1, mismatch repair system component. (921 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (342 aa)
rad51dRAD51 paralog D. (333 aa)
rad17RAD17 checkpoint clamp loader component. (635 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (858 aa)
mcm2DNA helicase; Belongs to the MCM family. (888 aa)
rpa2Replication protein A2. (278 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
ENSSDUP00000014088SCY domain-containing protein. (120 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2803 aa)
topbp1DNA topoisomerase II binding protein 1. (1519 aa)
xrcc2RECA_2 domain-containing protein. (308 aa)
blmBLM RecQ like helicase. (1392 aa)
LOC111228832Zgc:110269. (344 aa)
gmnnGeminin DNA replication inhibitor. (215 aa)
ENSSDUP00000015520BRCA2 DNA repair associated. (3048 aa)
cdc7Cell division cycle 7 homolog (S. cerevisiae); Belongs to the protein kinase superfamily. (472 aa)
polhPolymerase (DNA directed), eta. (690 aa)
atmNon-specific serine/threonine protein kinase. (2999 aa)
ENSSDUP00000016000RPA_C domain-containing protein. (250 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2248 aa)
pif1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (631 aa)
ddx11DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (896 aa)
rpa3Replication protein A3. (122 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (457 aa)
ENSSDUP00000018183RecQ helicase-like 4. (749 aa)
MCMDC2Minichromosome maintenance domain containing 2. (680 aa)
bard1BRCA1 associated RING domain 1. (809 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (921 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (389 aa)
fbh1F-box DNA helicase 1. (1016 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
rad52RAD52 homolog, DNA repair protein. (430 aa)
polkPolymerase (DNA directed) kappa. (884 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (932 aa)
cdt1Chromatin licensing and DNA replication factor 1. (534 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
rad1RAD1 homolog (S. pombe). (277 aa)
recql5RecQ helicase-like 5. (1022 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (680 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (279 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (343 aa)
ENSSDUP00000023101FA complementation group M. (382 aa)
pold1DNA polymerase. (1121 aa)
chtf18CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (877 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1070 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
orc3Origin recognition complex, subunit 3. (722 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
slf1SMC5-SMC6 complex localization factor 1. (857 aa)
mcm4DNA helicase; Belongs to the MCM family. (861 aa)
mcmbpMinichromosome maintenance complex binding protein. (636 aa)
rmi2RecQ mediated genome instability 2. (166 aa)
rhno1Si:ch73-352p4.5. (262 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1045 aa)
rad54lRAD54 like. (740 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1488 aa)
LOC111235454RAD51 paralog C. (351 aa)
orc5Origin recognition complex, subunit 5. (445 aa)
ENSSDUP00000027057Chromo_2 domain-containing protein. (702 aa)
ENSSDUP00000027074Uncharacterized protein. (204 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (226 aa)
CLSPNClaspin. (1356 aa)
mcm8Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (846 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
lig1DNA ligase. (616 aa)
atripUncharacterized protein. (802 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (696 aa)
cdca7Cell division cycle associated 7a. (401 aa)
ENSSDUP00000029806DBF4-type domain-containing protein. (806 aa)
brca1Uncharacterized protein. (1251 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (491 aa)
exo1Exonuclease 1. (797 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (732 aa)
poliPolymerase (DNA directed) iota. (728 aa)
rfc1Replication factor C subunit 1. (1181 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (423 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
rfc2Replication factor C (activator 1) 2. (387 aa)
mcph1Microcephalin 1. (822 aa)
MPHOSPH9M-phase phosphoprotein 9. (1290 aa)
prim2DNA primase subunit 2. (592 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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