41 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111224111	Uncharacterized protein. (154 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
	rack1	Receptor for activated C kinase 1. (317 aa)
	RPL36A	Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (213 aa)
	rpl34	Ribosomal protein L34. (123 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	rpl18	Ribosomal protein L18. (156 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (205 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (297 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	LOC111226661	Ribosomal protein L26. (178 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rps28	Ribosomal protein S28. (53 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (193 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rps4x	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rps10	Ribosomal protein S10. (178 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	rpl9	Ribosomal protein L9. (241 aa)
	rplp0	Ribosomal protein, large, P0. (253 aa)
	rpl6	Ribosomal protein L6. (257 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111224111	LOC111226661	ENSSDUP00000000836	ENSSDUP00000013440	Uncharacterized protein.	Ribosomal protein L26.	0.999
LOC111224111	RPL27A	ENSSDUP00000000836	ENSSDUP00000001927	Uncharacterized protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
LOC111224111	RPL36A	ENSSDUP00000000836	ENSSDUP00000006752	Uncharacterized protein.	Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
LOC111224111	RPL7A	ENSSDUP00000000836	ENSSDUP00000010899	Uncharacterized protein.	Ribosomal protein L7a.	0.999
LOC111224111	RPS20	ENSSDUP00000000836	ENSSDUP00000007734	Uncharacterized protein.	Ribosomal protein S20.	0.999
LOC111224111	rack1	ENSSDUP00000000836	ENSSDUP00000006301	Uncharacterized protein.	Receptor for activated C kinase 1.	0.999
LOC111224111	rpl12	ENSSDUP00000000836	ENSSDUP00000027753	Uncharacterized protein.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
LOC111224111	rpl13	ENSSDUP00000000836	ENSSDUP00000001609	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC111224111	rpl13a	ENSSDUP00000000836	ENSSDUP00000023648	Uncharacterized protein.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC111224111	rpl15	ENSSDUP00000000836	ENSSDUP00000015782	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
LOC111224111	rpl18	ENSSDUP00000000836	ENSSDUP00000010873	Uncharacterized protein.	Ribosomal protein L18.	0.999
LOC111224111	rpl18a	ENSSDUP00000000836	ENSSDUP00000017085	Uncharacterized protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
LOC111224111	rpl21	ENSSDUP00000000836	ENSSDUP00000020465	Uncharacterized protein.	Ribosomal protein L21.	0.999
LOC111224111	rpl23a	ENSSDUP00000000836	ENSSDUP00000005473	Uncharacterized protein.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
LOC111224111	rpl27	ENSSDUP00000000836	ENSSDUP00000030101	Uncharacterized protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC111224111	rpl28	ENSSDUP00000000836	ENSSDUP00000020781	Uncharacterized protein.	Ribosomal protein L28.	0.999
LOC111224111	rpl29	ENSSDUP00000000836	ENSSDUP00000022177	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
LOC111224111	rpl30	ENSSDUP00000000836	ENSSDUP00000015965	Uncharacterized protein.	Ribosomal protein L30.	0.999
LOC111224111	rpl32	ENSSDUP00000000836	ENSSDUP00000021027	Uncharacterized protein.	Ribosomal protein L32.	0.999
LOC111224111	rpl34	ENSSDUP00000000836	ENSSDUP00000009779	Uncharacterized protein.	Ribosomal protein L34.	0.999