(23 nodes) U2 snRNP, and U1 snRNA binding network (Seriola dumerili)

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Your Input:
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b2	Splicing factor 3b, subunit 2. (830 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (120 aa)
	Snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	sf3a3	Splicing factor 3a, subunit 3. (487 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (289 aa)
	sf3b4	Splicing factor 3b, subunit 4. (403 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	sf3a2	Splicing factor 3a, subunit 2. (292 aa)
	snrpf	Small nuclear ribonucleoprotein polypeptide F. (84 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1314 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (485 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (282 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (182 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (953 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (910 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snrpd1	ddx42	ENSSDUP00000014434	ENSSDUP00000030857	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	0.775
Snrpd1	ddx46	ENSSDUP00000014434	ENSSDUP00000029139	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.996
Snrpd1	phf5a	ENSSDUP00000014434	ENSSDUP00000010969	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	PHD finger protein 5A.	0.976
Snrpd1	sf3a1	ENSSDUP00000014434	ENSSDUP00000030853	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3a, subunit 1.	0.988
Snrpd1	sf3a2	ENSSDUP00000014434	ENSSDUP00000021737	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3a, subunit 2.	0.976
Snrpd1	sf3a3	ENSSDUP00000014434	ENSSDUP00000015907	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3a, subunit 3.	0.998
Snrpd1	sf3b1	ENSSDUP00000014434	ENSSDUP00000023993	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3b, subunit 1.	0.979
Snrpd1	sf3b2	ENSSDUP00000014434	ENSSDUP00000011694	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3b, subunit 2.	0.997
Snrpd1	sf3b3	ENSSDUP00000014434	ENSSDUP00000029467	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3b, subunit 3.	0.974
Snrpd1	sf3b4	ENSSDUP00000014434	ENSSDUP00000016503	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3b, subunit 4.	0.966
Snrpd1	sf3b5	ENSSDUP00000014434	ENSSDUP00000025002	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.969
Snrpd1	sf3b6	ENSSDUP00000014434	ENSSDUP00000008884	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3b, subunit 6.	0.961
Snrpd1	snrnp70	ENSSDUP00000014434	ENSSDUP00000024207	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein 70 (U1).	0.998
Snrpd1	snrpa	ENSSDUP00000014434	ENSSDUP00000025662	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide A.	0.974
Snrpd1	snrpa1	ENSSDUP00000014434	ENSSDUP00000016191	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide A.	0.998
Snrpd1	snrpb	ENSSDUP00000014434	ENSSDUP00000025543	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein-associated protein.	0.998
Snrpd1	snrpc	ENSSDUP00000014434	ENSSDUP00000026048	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.992
Snrpd1	snrpd2	ENSSDUP00000014434	ENSSDUP00000007514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpd1	snrpd3	ENSSDUP00000014434	ENSSDUP00000009353	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpd1	snrpe	ENSSDUP00000014434	ENSSDUP00000014089	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999