18 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	poli	Polymerase (DNA directed) iota. (728 aa)
	pola1	DNA polymerase. (1474 aa)
	primpol	Primase and polymerase (DNA-directed). (540 aa)
	rev1	REV1 DNA directed polymerase. (1431 aa)
	haus3	HAUS augmin-like complex, subunit 3. (653 aa)
	poln	Polymerase (DNA directed) nu. (1548 aa)
	rev3l	REV3 like, DNA directed polymerase zeta catalytic subunit. (2803 aa)
	polh	Polymerase (DNA directed), eta. (690 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
	polk	Polymerase (DNA directed) kappa. (884 aa)
	pold1	DNA polymerase. (1121 aa)
	polg	Polymerase (DNA directed), gamma. (1185 aa)
	polg2	Polymerase (DNA directed), gamma 2, accessory subunit. (454 aa)
	dntt	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (498 aa)
	poll	Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. (567 aa)
	polq	Polymerase (DNA directed), theta. (2105 aa)
	polb	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (336 aa)
	polm	DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (535 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dntt	polb	ENSSDUP00000027812	ENSSDUP00000031976	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.535
dntt	pold1	ENSSDUP00000027812	ENSSDUP00000023525	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	DNA polymerase.	0.614
dntt	pole	ENSSDUP00000027812	ENSSDUP00000018018	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.563
dntt	poll	ENSSDUP00000027812	ENSSDUP00000029789	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.	0.584
dntt	rev1	ENSSDUP00000027812	ENSSDUP00000009158	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	REV1 DNA directed polymerase.	0.416
dntt	rev3l	ENSSDUP00000027812	ENSSDUP00000014191	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	REV3 like, DNA directed polymerase zeta catalytic subunit.	0.550
haus3	poln	ENSSDUP00000009634	ENSSDUP00000009658	HAUS augmin-like complex, subunit 3.	Polymerase (DNA directed) nu.	0.502
pola1	pold1	ENSSDUP00000003623	ENSSDUP00000023525	DNA polymerase.	DNA polymerase.	0.987
pola1	pole	ENSSDUP00000003623	ENSSDUP00000018018	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.997
pola1	polh	ENSSDUP00000003623	ENSSDUP00000015777	DNA polymerase.	Polymerase (DNA directed), eta.	0.762
pola1	poli	ENSSDUP00000003623	ENSSDUP00000031056	DNA polymerase.	Polymerase (DNA directed) iota.	0.761
pola1	polk	ENSSDUP00000003623	ENSSDUP00000021860	DNA polymerase.	Polymerase (DNA directed) kappa.	0.761
pola1	poln	ENSSDUP00000003623	ENSSDUP00000009658	DNA polymerase.	Polymerase (DNA directed) nu.	0.431
pola1	polq	ENSSDUP00000003623	ENSSDUP00000031019	DNA polymerase.	Polymerase (DNA directed), theta.	0.431
pola1	rev1	ENSSDUP00000003623	ENSSDUP00000009158	DNA polymerase.	REV1 DNA directed polymerase.	0.761
pola1	rev3l	ENSSDUP00000003623	ENSSDUP00000014191	DNA polymerase.	REV3 like, DNA directed polymerase zeta catalytic subunit.	0.544
polb	dntt	ENSSDUP00000031976	ENSSDUP00000027812	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	0.535
polb	pold1	ENSSDUP00000031976	ENSSDUP00000023525	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	DNA polymerase.	0.762
polb	pole	ENSSDUP00000031976	ENSSDUP00000018018	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.766
polb	polh	ENSSDUP00000031976	ENSSDUP00000015777	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Polymerase (DNA directed), eta.	0.434