40 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111238363	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	rpl18	Ribosomal protein L18. (156 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	rpl4	Ribosomal protein L4. (242 aa)
	RPL3L	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
	rpl7l1	Ribosomal protein L7-like 1. (247 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (251 aa)
	ENSSDUP00000012997	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (102 aa)
	LOC111226661	Ribosomal protein L26. (178 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC111240272	Ribos_L4_asso_C domain-containing protein. (234 aa)
	LOC111240302	Ribosomal_L16 domain-containing protein. (119 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	RPL5	Ribosomal protein L5. (298 aa)
	rpl7	Ribosomal protein L7. (260 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
	LOC111228782	Ubiquitin A-52 residue ribosomal protein fusion product 1. (132 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	rpl35	Ribosomal protein L35. (129 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	ENSSDUP00000022981	Uncharacterized protein. (1351 aa)
	ENSSDUP00000023177	Uncharacterized protein. (121 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (321 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
	ENSSDUP00000028342	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	LOC111219798	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	LOC111217524	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	LOC111219392	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	RPL5-2	Ribosomal protein L5b. (371 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
	rpl6	Ribosomal protein L6. (257 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (118 aa)
	rpl14	Ribosomal protein L14. (136 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	rpl37a	Ribosomal protein L37a. (91 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000012997	ENSSDUP00000022981	ENSSDUP00000012997	ENSSDUP00000022981	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.970
ENSSDUP00000012997	ENSSDUP00000023177	ENSSDUP00000012997	ENSSDUP00000023177	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.982
ENSSDUP00000012997	ENSSDUP00000028342	ENSSDUP00000012997	ENSSDUP00000028342	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.978
ENSSDUP00000012997	LOC111217524	ENSSDUP00000012997	ENSSDUP00000029995	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.979
ENSSDUP00000012997	LOC111219392	ENSSDUP00000012997	ENSSDUP00000030102	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.973
ENSSDUP00000012997	LOC111219798	ENSSDUP00000012997	ENSSDUP00000029463	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.982
ENSSDUP00000012997	LOC111226661	ENSSDUP00000012997	ENSSDUP00000013440	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L26.	0.995
ENSSDUP00000012997	LOC111228782	ENSSDUP00000012997	ENSSDUP00000018383	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.943
ENSSDUP00000012997	LOC111238363	ENSSDUP00000012997	ENSSDUP00000010152	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.973
ENSSDUP00000012997	LOC111240272	ENSSDUP00000012997	ENSSDUP00000013641	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribos_L4_asso_C domain-containing protein.	0.981
ENSSDUP00000012997	LOC111240302	ENSSDUP00000012997	ENSSDUP00000014306	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L16 domain-containing protein.	0.977
ENSSDUP00000012997	RPL19	ENSSDUP00000012997	ENSSDUP00000031521	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.982
ENSSDUP00000012997	RPL27A	ENSSDUP00000012997	ENSSDUP00000001927	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.995
ENSSDUP00000012997	RPL3L	ENSSDUP00000012997	ENSSDUP00000011299	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	0.979
ENSSDUP00000012997	RPL5	ENSSDUP00000012997	ENSSDUP00000016017	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L5.	0.984
ENSSDUP00000012997	RPL5-2	ENSSDUP00000012997	ENSSDUP00000031213	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L5b.	0.984
ENSSDUP00000012997	RPL7A	ENSSDUP00000012997	ENSSDUP00000010899	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L7a.	0.994
ENSSDUP00000012997	mrpl1	ENSSDUP00000012997	ENSSDUP00000025436	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Mitochondrial ribosomal protein L1.	0.924
ENSSDUP00000012997	rpl10	ENSSDUP00000012997	ENSSDUP00000018717	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L10.	0.977
ENSSDUP00000012997	rpl12	ENSSDUP00000012997	ENSSDUP00000027753	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.992