15 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	urm1	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically [...] (101 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	ENSSDUP00000008140	Rad60-SLD domain-containing protein. (158 aa)
	LOC111235685	NEDD8 ubiquitin like modifier. (129 aa)
	ubb	Uncharacterized protein. (153 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC111223799	Ubiquitin-like domain-containing protein. (94 aa)
	LOC111228782	Ubiquitin A-52 residue ribosomal protein fusion product 1. (132 aa)
	SUMO3	Small ubiquitin-related modifier. (94 aa)
	UBL5	Ubiquitin like 5. (73 aa)
	ubc	Uncharacterized protein. (748 aa)
	LOC111218242	Small ubiquitin-related modifier. (95 aa)
	LOC111236357	Small ubiquitin-related modifier. (96 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000008140	LOC111223799	ENSSDUP00000008140	ENSSDUP00000016406	Rad60-SLD domain-containing protein.	Ubiquitin-like domain-containing protein.	0.700
ENSSDUP00000008140	LOC111228782	ENSSDUP00000008140	ENSSDUP00000018383	Rad60-SLD domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.566
ENSSDUP00000008140	LOC111235685	ENSSDUP00000008140	ENSSDUP00000009036	Rad60-SLD domain-containing protein.	NEDD8 ubiquitin like modifier.	0.700
ENSSDUP00000008140	uba52	ENSSDUP00000008140	ENSSDUP00000013443	Rad60-SLD domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.566
ENSSDUP00000008140	ubb	ENSSDUP00000008140	ENSSDUP00000009754	Rad60-SLD domain-containing protein.	Uncharacterized protein.	0.466
ENSSDUP00000008140	ubc	ENSSDUP00000008140	ENSSDUP00000023286	Rad60-SLD domain-containing protein.	Uncharacterized protein.	0.466
LOC111218242	LOC111223799	ENSSDUP00000024649	ENSSDUP00000016406	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.744
LOC111218242	LOC111228782	ENSSDUP00000024649	ENSSDUP00000018383	Small ubiquitin-related modifier.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.610
LOC111218242	LOC111235685	ENSSDUP00000024649	ENSSDUP00000009036	Small ubiquitin-related modifier.	NEDD8 ubiquitin like modifier.	0.744
LOC111218242	sumo1	ENSSDUP00000024649	ENSSDUP00000010585	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.663
LOC111218242	uba52	ENSSDUP00000024649	ENSSDUP00000013443	Small ubiquitin-related modifier.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.610
LOC111218242	ubb	ENSSDUP00000024649	ENSSDUP00000009754	Small ubiquitin-related modifier.	Uncharacterized protein.	0.605
LOC111218242	ubc	ENSSDUP00000024649	ENSSDUP00000023286	Small ubiquitin-related modifier.	Uncharacterized protein.	0.605
LOC111223799	ENSSDUP00000008140	ENSSDUP00000016406	ENSSDUP00000008140	Ubiquitin-like domain-containing protein.	Rad60-SLD domain-containing protein.	0.700
LOC111223799	LOC111218242	ENSSDUP00000016406	ENSSDUP00000024649	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.744
LOC111223799	LOC111228782	ENSSDUP00000016406	ENSSDUP00000018383	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.836
LOC111223799	LOC111236357	ENSSDUP00000016406	ENSSDUP00000028616	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.744
LOC111223799	SUMO3	ENSSDUP00000016406	ENSSDUP00000019646	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.744
LOC111223799	UBL5	ENSSDUP00000016406	ENSSDUP00000021079	Ubiquitin-like domain-containing protein.	Ubiquitin like 5.	0.785
LOC111223799	sumo1	ENSSDUP00000016406	ENSSDUP00000010585	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.814