(6 nodes) pICln-Sm protein complex network (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpf	Small nuclear ribonucleoprotein polypeptide F. (84 aa)
	Snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (120 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (240 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snrpd1	clns1a	ENSSDUP00000014434	ENSSDUP00000005547	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Chloride channel, nucleotide-sensitive, 1A.	0.995
Snrpd1	snrpd2	ENSSDUP00000014434	ENSSDUP00000007514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpd1	snrpd3	ENSSDUP00000014434	ENSSDUP00000009353	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpd1	snrpe	ENSSDUP00000014434	ENSSDUP00000014089	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Snrpd1	snrpf	ENSSDUP00000014434	ENSSDUP00000022358	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide F.	0.999
clns1a	Snrpd1	ENSSDUP00000005547	ENSSDUP00000014434	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.995
clns1a	snrpd2	ENSSDUP00000005547	ENSSDUP00000007514	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D2.	0.942
clns1a	snrpd3	ENSSDUP00000005547	ENSSDUP00000009353	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D3.	0.951
clns1a	snrpe	ENSSDUP00000005547	ENSSDUP00000014089	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.931
clns1a	snrpf	ENSSDUP00000005547	ENSSDUP00000022358	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.900
snrpd2	Snrpd1	ENSSDUP00000007514	ENSSDUP00000014434	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd2	clns1a	ENSSDUP00000007514	ENSSDUP00000005547	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.942
snrpd2	snrpd3	ENSSDUP00000007514	ENSSDUP00000009353	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
snrpd2	snrpe	ENSSDUP00000007514	ENSSDUP00000014089	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd2	snrpf	ENSSDUP00000007514	ENSSDUP00000022358	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd3	Snrpd1	ENSSDUP00000009353	ENSSDUP00000014434	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd3	clns1a	ENSSDUP00000009353	ENSSDUP00000005547	Small nuclear ribonucleoprotein Sm D3.	Chloride channel, nucleotide-sensitive, 1A.	0.951
snrpd3	snrpd2	ENSSDUP00000009353	ENSSDUP00000007514	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
snrpd3	snrpe	ENSSDUP00000009353	ENSSDUP00000014089	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd3	snrpf	ENSSDUP00000009353	ENSSDUP00000022358	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein polypeptide F.	0.999