6 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111223384	Uncharacterized protein. (108 aa)
	pln	Cardiac phospholamban; Reversibly inhibits the activity of ATP2A2 in cardiac sarcoplasmic reticulum by decreasing the apparent affinity of the ATPase for Ca(2+). Modulates the contractility of the heart muscle in response to physiological stimuli via its effects on ATP2A2. Modulates calcium re-uptake during muscle relaxation and plays an important role in calcium homeostasis in the heart muscle. The degree of ATP2A2 inhibition depends on the oligomeric state of PLN. (53 aa)
	LOC111238487	TSC complex subunit 1b. (1428 aa)
	ENSSDUP00000016177	Uncharacterized protein. (257 aa)
	LOC111225889	ATP synthase inhibitory factor subunit 1b. (107 aa)
	fnip1	Folliculin interacting protein 1. (1304 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000016177	LOC111238487	ENSSDUP00000016177	ENSSDUP00000015916	Uncharacterized protein.	TSC complex subunit 1b.	0.901
ENSSDUP00000016177	fnip1	ENSSDUP00000016177	ENSSDUP00000028384	Uncharacterized protein.	Folliculin interacting protein 1.	0.579
LOC111238487	ENSSDUP00000016177	ENSSDUP00000015916	ENSSDUP00000016177	TSC complex subunit 1b.	Uncharacterized protein.	0.901
LOC111238487	fnip1	ENSSDUP00000015916	ENSSDUP00000028384	TSC complex subunit 1b.	Folliculin interacting protein 1.	0.579
fnip1	ENSSDUP00000016177	ENSSDUP00000028384	ENSSDUP00000016177	Folliculin interacting protein 1.	Uncharacterized protein.	0.579
fnip1	LOC111238487	ENSSDUP00000028384	ENSSDUP00000015916	Folliculin interacting protein 1.	TSC complex subunit 1b.	0.579