(14 nodes) Alpha-catenin binding network (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111236265	Uncharacterized protein. (714 aa)
	PKP3	Plakophilin 3a. (827 aa)
	LOC111219856	Vinculin b. (1066 aa)
	LOC111221592	Cadherin 27. (582 aa)
	LOC111217408	Uncharacterized protein. (926 aa)
	ENSSDUP00000031716	Cadherin 26, tandem duplicate 1. (623 aa)
	LOC111234345	Vinculin a. (1158 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	LOC111232870	NUMB like endocytic adaptor protein. (749 aa)
	LOC111219723	Plakophilin 3b. (777 aa)
	LOC111222989	Uncharacterized protein. (768 aa)
	ajuba	Ajuba LIM protein. (729 aa)
	numb	NUMB endocytic adaptor protein. (665 aa)
	LOC111229402	Junction plakoglobin a. (724 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111219723	LOC111219856	ENSSDUP00000015699	ENSSDUP00000028778	Plakophilin 3b.	Vinculin b.	0.442
LOC111219723	LOC111222989	ENSSDUP00000015699	ENSSDUP00000010685	Plakophilin 3b.	Uncharacterized protein.	0.492
LOC111219723	LOC111229402	ENSSDUP00000015699	ENSSDUP00000001365	Plakophilin 3b.	Junction plakoglobin a.	0.608
LOC111219723	LOC111234345	ENSSDUP00000015699	ENSSDUP00000032206	Plakophilin 3b.	Vinculin a.	0.442
LOC111219723	LOC111236265	ENSSDUP00000015699	ENSSDUP00000022993	Plakophilin 3b.	Uncharacterized protein.	0.608
LOC111219723	ctnnb1	ENSSDUP00000015699	ENSSDUP00000016896	Plakophilin 3b.	Catenin (cadherin-associated protein), beta 1.	0.492
LOC111219856	LOC111219723	ENSSDUP00000028778	ENSSDUP00000015699	Vinculin b.	Plakophilin 3b.	0.442
LOC111219856	LOC111222989	ENSSDUP00000028778	ENSSDUP00000010685	Vinculin b.	Uncharacterized protein.	0.633
LOC111219856	LOC111229402	ENSSDUP00000028778	ENSSDUP00000001365	Vinculin b.	Junction plakoglobin a.	0.651
LOC111219856	LOC111236265	ENSSDUP00000028778	ENSSDUP00000022993	Vinculin b.	Uncharacterized protein.	0.651
LOC111219856	PKP3	ENSSDUP00000028778	ENSSDUP00000027703	Vinculin b.	Plakophilin 3a.	0.442
LOC111219856	ctnnb1	ENSSDUP00000028778	ENSSDUP00000016896	Vinculin b.	Catenin (cadherin-associated protein), beta 1.	0.777
LOC111222989	LOC111219723	ENSSDUP00000010685	ENSSDUP00000015699	Uncharacterized protein.	Plakophilin 3b.	0.492
LOC111222989	LOC111219856	ENSSDUP00000010685	ENSSDUP00000028778	Uncharacterized protein.	Vinculin b.	0.633
LOC111222989	LOC111234345	ENSSDUP00000010685	ENSSDUP00000032206	Uncharacterized protein.	Vinculin a.	0.633
LOC111222989	PKP3	ENSSDUP00000010685	ENSSDUP00000027703	Uncharacterized protein.	Plakophilin 3a.	0.492
LOC111222989	ctnnb1	ENSSDUP00000010685	ENSSDUP00000016896	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.900
LOC111229402	LOC111219723	ENSSDUP00000001365	ENSSDUP00000015699	Junction plakoglobin a.	Plakophilin 3b.	0.608
LOC111229402	LOC111219856	ENSSDUP00000001365	ENSSDUP00000028778	Junction plakoglobin a.	Vinculin b.	0.651
LOC111229402	LOC111234345	ENSSDUP00000001365	ENSSDUP00000032206	Junction plakoglobin a.	Vinculin a.	0.651