(33 nodes) Positive regulation of fat cell differentiation network (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	asxl2	ASXL transcriptional regulator 2. (1204 aa)
	ENSSDUP00000013593	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (370 aa)
	LOC111235829	Zinc finger CCCH-type containing 12A. (625 aa)
	ENSSDUP00000013612	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (365 aa)
	LOC111234031	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family. (377 aa)
	FFAR4	Free fatty acid receptor 4. (352 aa)
	LOC111220330	Synapse associated protein 1. (363 aa)
	tmem64	Transmembrane protein 64. (352 aa)
	cmklr1	Chemokine-like receptor 1; Belongs to the G-protein coupled receptor 1 family. (343 aa)
	ptgs2	Prostaglandin-endoperoxide synthase 2b. (667 aa)
	crebl2	cAMP responsive element binding protein-like 2. (121 aa)
	htr2a	5-hydroxytryptamine (serotonin) receptor 2A, genome duplicate a. (478 aa)
	metrnl	Meteorin like, glial cell differentiation regulator a. (286 aa)
	medag	Uncharacterized protein. (217 aa)
	LOC111232904	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	sirt6	Sirtuin 6. (350 aa)
	carm1	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (581 aa)
	ENSSDUP00000022193	Ras responsive element binding protein 1a. (1540 aa)
	xbp1	X-box binding protein 1. (264 aa)
	SYAP1	Synapse associated protein 1. (336 aa)
	sfrp2	Secreted frizzled-related protein 2. (295 aa)
	klf5	Progesterone immunomodulatory binding factor 1. (601 aa)
	LOC111233348	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (441 aa)
	LOC111229271	Nocturnin. (366 aa)
	LOC111224124	Uncharacterized protein. (340 aa)
	noct	Nocturnin. (448 aa)
	LOC111235085	CCAAT enhancer binding protein beta. (299 aa)
	VSTM2A	V-set and transmembrane domain containing 2A. (232 aa)
	LOC111225006	N-acyl phosphatidylethanolamine phospholipase D. (453 aa)
	sav1	Salvador family WW domain containing protein 1. (425 aa)
	LOC111230596	Si:dkey-206d17.12. (638 aa)
	LOC111217245	Kruppel-like factor 5 like. (436 aa)
	LOC111218842	Kruppel-like factor 5b. (211 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111217245	LOC111235085	ENSSDUP00000012143	ENSSDUP00000002016	Kruppel-like factor 5 like.	CCAAT enhancer binding protein beta.	0.596
LOC111218842	LOC111235085	ENSSDUP00000012295	ENSSDUP00000002016	Kruppel-like factor 5b.	CCAAT enhancer binding protein beta.	0.596
LOC111235085	LOC111217245	ENSSDUP00000002016	ENSSDUP00000012143	CCAAT enhancer binding protein beta.	Kruppel-like factor 5 like.	0.596
LOC111235085	LOC111218842	ENSSDUP00000002016	ENSSDUP00000012295	CCAAT enhancer binding protein beta.	Kruppel-like factor 5b.	0.596
LOC111235085	klf5	ENSSDUP00000002016	ENSSDUP00000024550	CCAAT enhancer binding protein beta.	Progesterone immunomodulatory binding factor 1.	0.596
klf5	LOC111235085	ENSSDUP00000024550	ENSSDUP00000002016	Progesterone immunomodulatory binding factor 1.	CCAAT enhancer binding protein beta.	0.596