STRINGSTRING
xrcc5 xrcc5 paxx paxx xrcc6 xrcc6 LOC111224285 LOC111224285 prkdc prkdc xrcc4 xrcc4 LOC111224843 LOC111224843 lig4 lig4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xrcc5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (726 aa)
paxxPAXX non-homologous end joining factor. (195 aa)
xrcc6X-ray repair complementing defective repair in Chinese hamster cells 6. (610 aa)
LOC111224285X-ray repair complementing defective repair in Chinese hamster cells 4. (338 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3939 aa)
xrcc4Uncharacterized protein. (298 aa)
LOC111224843DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (657 aa)
lig4DNA ligase. (914 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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