(9 nodes) BRCA1-A complex network (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	babam1	BRISC and BRCA1 A complex member 1. (377 aa)
	ENSSDUP00000021155	Reverse transcriptase domain-containing protein. (1217 aa)
	abraxas1	Abraxas 1, BRCA1 A complex subunit. (361 aa)
	babam2	BRISC and BRCA1 A complex member 2. (383 aa)
	brca1	Uncharacterized protein. (1251 aa)
	uimc1	RAP80_UIM domain-containing protein. (1088 aa)
	ENSSDUP00000008454	Reverse transcriptase domain-containing protein. (1306 aa)
	bard1	BRCA1 associated RING domain 1. (809 aa)
	Brcc3	BRCA1/BRCA2-containing complex, subunit 3. (280 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Brcc3	ENSSDUP00000008454	ENSSDUP00000002266	ENSSDUP00000008454	BRCA1/BRCA2-containing complex, subunit 3.	Reverse transcriptase domain-containing protein.	0.950
Brcc3	ENSSDUP00000021155	ENSSDUP00000002266	ENSSDUP00000021155	BRCA1/BRCA2-containing complex, subunit 3.	Reverse transcriptase domain-containing protein.	0.950
Brcc3	abraxas1	ENSSDUP00000002266	ENSSDUP00000021579	BRCA1/BRCA2-containing complex, subunit 3.	Abraxas 1, BRCA1 A complex subunit.	0.510
Brcc3	babam1	ENSSDUP00000002266	ENSSDUP00000014658	BRCA1/BRCA2-containing complex, subunit 3.	BRISC and BRCA1 A complex member 1.	0.999
Brcc3	babam2	ENSSDUP00000002266	ENSSDUP00000025838	BRCA1/BRCA2-containing complex, subunit 3.	BRISC and BRCA1 A complex member 2.	0.999
Brcc3	bard1	ENSSDUP00000002266	ENSSDUP00000019914	BRCA1/BRCA2-containing complex, subunit 3.	BRCA1 associated RING domain 1.	0.907
Brcc3	brca1	ENSSDUP00000002266	ENSSDUP00000029899	BRCA1/BRCA2-containing complex, subunit 3.	Uncharacterized protein.	0.955
Brcc3	uimc1	ENSSDUP00000002266	ENSSDUP00000030629	BRCA1/BRCA2-containing complex, subunit 3.	RAP80_UIM domain-containing protein.	0.966
ENSSDUP00000008454	Brcc3	ENSSDUP00000008454	ENSSDUP00000002266	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.950
ENSSDUP00000008454	babam1	ENSSDUP00000008454	ENSSDUP00000014658	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.950
ENSSDUP00000008454	babam2	ENSSDUP00000008454	ENSSDUP00000025838	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.950
ENSSDUP00000008454	bard1	ENSSDUP00000008454	ENSSDUP00000019914	Reverse transcriptase domain-containing protein.	BRCA1 associated RING domain 1.	0.829
ENSSDUP00000008454	brca1	ENSSDUP00000008454	ENSSDUP00000029899	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.925
ENSSDUP00000021155	Brcc3	ENSSDUP00000021155	ENSSDUP00000002266	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.950
ENSSDUP00000021155	babam1	ENSSDUP00000021155	ENSSDUP00000014658	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.950
ENSSDUP00000021155	babam2	ENSSDUP00000021155	ENSSDUP00000025838	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.950
ENSSDUP00000021155	bard1	ENSSDUP00000021155	ENSSDUP00000019914	Reverse transcriptase domain-containing protein.	BRCA1 associated RING domain 1.	0.829
ENSSDUP00000021155	brca1	ENSSDUP00000021155	ENSSDUP00000029899	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.925
abraxas1	Brcc3	ENSSDUP00000021579	ENSSDUP00000002266	Abraxas 1, BRCA1 A complex subunit.	BRCA1/BRCA2-containing complex, subunit 3.	0.510
abraxas1	babam1	ENSSDUP00000021579	ENSSDUP00000014658	Abraxas 1, BRCA1 A complex subunit.	BRISC and BRCA1 A complex member 1.	0.948