(10 nodes) UV-damage excision repair network (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ino80	INO80 complex ATPase subunit. (1573 aa)
	ddb1	Damage-specific DNA binding protein 1. (1140 aa)
	ENSSDUP00000012202	Uncharacterized protein. (731 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
	xpa	Xeroderma pigmentosum, complementation group A. (275 aa)
	xpc	Xeroderma pigmentosum, complementation group C. (855 aa)
	ercc1	Excision repair cross-complementation group 1. (357 aa)
	sirt1	Deacetylase sirtuin-type domain-containing protein. (695 aa)
	mc1r	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. (323 aa)
	actr5	Actin related protein 5; Belongs to the actin family. (630 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000012202	actr5	ENSSDUP00000012202	ENSSDUP00000027977	Uncharacterized protein.	Actin related protein 5; Belongs to the actin family.	0.954
ENSSDUP00000012202	ddb1	ENSSDUP00000012202	ENSSDUP00000006352	Uncharacterized protein.	Damage-specific DNA binding protein 1.	0.559
ENSSDUP00000012202	xpa	ENSSDUP00000012202	ENSSDUP00000014540	Uncharacterized protein.	Xeroderma pigmentosum, complementation group A.	0.524
ENSSDUP00000012202	xpc	ENSSDUP00000012202	ENSSDUP00000022702	Uncharacterized protein.	Xeroderma pigmentosum, complementation group C.	0.566
actr5	ENSSDUP00000012202	ENSSDUP00000027977	ENSSDUP00000012202	Actin related protein 5; Belongs to the actin family.	Uncharacterized protein.	0.954
actr5	ddb1	ENSSDUP00000027977	ENSSDUP00000006352	Actin related protein 5; Belongs to the actin family.	Damage-specific DNA binding protein 1.	0.635
actr5	ino80	ENSSDUP00000027977	ENSSDUP00000013707	Actin related protein 5; Belongs to the actin family.	INO80 complex ATPase subunit.	0.997
actr5	xpa	ENSSDUP00000027977	ENSSDUP00000014540	Actin related protein 5; Belongs to the actin family.	Xeroderma pigmentosum, complementation group A.	0.570
ddb1	ENSSDUP00000012202	ENSSDUP00000006352	ENSSDUP00000012202	Damage-specific DNA binding protein 1.	Uncharacterized protein.	0.559
ddb1	actr5	ENSSDUP00000006352	ENSSDUP00000027977	Damage-specific DNA binding protein 1.	Actin related protein 5; Belongs to the actin family.	0.635
ddb1	ercc1	ENSSDUP00000006352	ENSSDUP00000023105	Damage-specific DNA binding protein 1.	Excision repair cross-complementation group 1.	0.854
ddb1	ino80	ENSSDUP00000006352	ENSSDUP00000013707	Damage-specific DNA binding protein 1.	INO80 complex ATPase subunit.	0.622
ddb1	sirt1	ENSSDUP00000006352	ENSSDUP00000024624	Damage-specific DNA binding protein 1.	Deacetylase sirtuin-type domain-containing protein.	0.456
ddb1	xpa	ENSSDUP00000006352	ENSSDUP00000014540	Damage-specific DNA binding protein 1.	Xeroderma pigmentosum, complementation group A.	0.950
ddb1	xpc	ENSSDUP00000006352	ENSSDUP00000022702	Damage-specific DNA binding protein 1.	Xeroderma pigmentosum, complementation group C.	0.944
ercc1	ddb1	ENSSDUP00000023105	ENSSDUP00000006352	Excision repair cross-complementation group 1.	Damage-specific DNA binding protein 1.	0.854
ercc1	xpa	ENSSDUP00000023105	ENSSDUP00000014540	Excision repair cross-complementation group 1.	Xeroderma pigmentosum, complementation group A.	0.983
ercc1	xpc	ENSSDUP00000023105	ENSSDUP00000022702	Excision repair cross-complementation group 1.	Xeroderma pigmentosum, complementation group C.	0.665
ino80	actr5	ENSSDUP00000013707	ENSSDUP00000027977	INO80 complex ATPase subunit.	Actin related protein 5; Belongs to the actin family.	0.997
ino80	ddb1	ENSSDUP00000013707	ENSSDUP00000006352	INO80 complex ATPase subunit.	Damage-specific DNA binding protein 1.	0.622