69 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl19	Mitochondrial ribosomal protein L19. (283 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (176 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	mrpl14	Mitochondrial ribosomal protein L14. (148 aa)
	mrpl21	Uncharacterized protein. (195 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (315 aa)
	ENSSDUP00000002477	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (126 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	mrpl47	Mitochondrial ribosomal protein L47. (259 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (189 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (297 aa)
	mrpl37	Mitochondrial ribosomal protein L37. (432 aa)
	mrpl22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	RPL36A	Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (274 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (145 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (129 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (258 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (159 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (135 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	rpl4	Ribosomal protein L4. (242 aa)
	mrpl46	Mitochondrial ribosomal protein L46. (294 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	mrpl15	Mitochondrial ribosomal protein L15. (304 aa)
	mrpl38	Mitochondrial ribosomal protein L38. (387 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (251 aa)
	mpv17l2	MPV17 mitochondrial membrane protein-like 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (215 aa)
	mrpl54	Mitochondrial ribosomal protein L54. (137 aa)
	LOC111226661	Ribosomal protein L26. (178 aa)
	LOC111240272	Ribos_L4_asso_C domain-containing protein. (234 aa)
	mrpl10	Mitochondrial ribosomal protein L10. (249 aa)
	LOC111240302	Ribosomal_L16 domain-containing protein. (119 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (108 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	mrpl58	Mitochondrial ribosomal protein L58. (189 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (184 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (175 aa)
	mrpl43	Mitochondrial ribosomal protein L43. (151 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (125 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (168 aa)
	rpl35	Ribosomal protein L35. (129 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (195 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (189 aa)
	mrpl48	Mitochondrial ribosomal protein L48. (212 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	mrpl13	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (179 aa)
	LOC111229036	Mitochondrial transcription termination factor 4. (271 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	ENSSDUP00000025757	Uncharacterized protein. (59 aa)
	ccdc32	Coiled-coil domain containing 32. (196 aa)
	LOC111228634	Mitochondrial ribosomal protein L23. (154 aa)
	ENSSDUP00000028342	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	LOC111219798	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (354 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	mrps30	Mitochondrial ribosomal protein S30. (442 aa)
	rpl9	Ribosomal protein L9. (241 aa)
	mrpl55	Zgc:171480. (147 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
	rpl6	Ribosomal protein L6. (257 aa)
	mrpl40	Mitochondrial ribosomal protein L40. (204 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000002477	ENSSDUP00000025757	ENSSDUP00000002477	ENSSDUP00000025757	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
ENSSDUP00000002477	LOC111226661	ENSSDUP00000002477	ENSSDUP00000013440	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L26.	0.991
ENSSDUP00000002477	LOC111228634	ENSSDUP00000002477	ENSSDUP00000027102	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L23.	0.993
ENSSDUP00000002477	LOC111229036	ENSSDUP00000002477	ENSSDUP00000024443	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial transcription termination factor 4.	0.632
ENSSDUP00000002477	LOC111240272	ENSSDUP00000002477	ENSSDUP00000013641	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribos_L4_asso_C domain-containing protein.	0.967
ENSSDUP00000002477	LOC111240302	ENSSDUP00000002477	ENSSDUP00000014306	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L16 domain-containing protein.	0.960
ENSSDUP00000002477	MRPL49	ENSSDUP00000002477	ENSSDUP00000018914	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L49.	0.996
ENSSDUP00000002477	ccdc32	ENSSDUP00000002477	ENSSDUP00000026328	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Coiled-coil domain containing 32.	0.787
ENSSDUP00000002477	mrpl10	ENSSDUP00000002477	ENSSDUP00000014058	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L10.	0.904
ENSSDUP00000002477	mrpl11	ENSSDUP00000002477	ENSSDUP00000025266	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSSDUP00000002477	mrpl12	ENSSDUP00000002477	ENSSDUP00000019993	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L12.	0.999
ENSSDUP00000002477	mrpl13	ENSSDUP00000002477	ENSSDUP00000022674	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSSDUP00000002477	mrpl14	ENSSDUP00000002477	ENSSDUP00000001887	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L14.	0.965
ENSSDUP00000002477	mrpl15	ENSSDUP00000002477	ENSSDUP00000012097	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L15.	0.999
ENSSDUP00000002477	mrpl16	ENSSDUP00000002477	ENSSDUP00000008818	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L16.	0.999
ENSSDUP00000002477	mrpl17	ENSSDUP00000002477	ENSSDUP00000001551	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
ENSSDUP00000002477	mrpl18	ENSSDUP00000002477	ENSSDUP00000004328	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L18.	0.858
ENSSDUP00000002477	mrpl19	ENSSDUP00000002477	ENSSDUP00000000492	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L19.	0.999
ENSSDUP00000002477	mrpl2	ENSSDUP00000002477	ENSSDUP00000005058	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L2.	0.999
ENSSDUP00000002477	mrpl20	ENSSDUP00000002477	ENSSDUP00000011868	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.999