19 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111240302	Ribosomal_L16 domain-containing protein. (119 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	LOC111240272	Ribos_L4_asso_C domain-containing protein. (234 aa)
	LOC111226661	Ribosomal protein L26. (178 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (251 aa)
	rpl4	Ribosomal protein L4. (242 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	ENSSDUP00000028342	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	LOC111219798	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	rpl9	Ribosomal protein L9. (241 aa)
	rpl6	Ribosomal protein L6. (257 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000028342	LOC111219798	ENSSDUP00000028342	ENSSDUP00000029463	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.980
ENSSDUP00000028342	LOC111226661	ENSSDUP00000028342	ENSSDUP00000013440	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L26.	0.994
ENSSDUP00000028342	LOC111240272	ENSSDUP00000028342	ENSSDUP00000013641	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribos_L4_asso_C domain-containing protein.	0.978
ENSSDUP00000028342	LOC111240302	ENSSDUP00000028342	ENSSDUP00000014306	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal_L16 domain-containing protein.	0.970
ENSSDUP00000028342	RPL19	ENSSDUP00000028342	ENSSDUP00000031521	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.980
ENSSDUP00000028342	rpl10	ENSSDUP00000028342	ENSSDUP00000018717	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L10.	0.970
ENSSDUP00000028342	rpl15	ENSSDUP00000028342	ENSSDUP00000015782	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.991
ENSSDUP00000028342	rpl18a	ENSSDUP00000028342	ENSSDUP00000017085	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.990
ENSSDUP00000028342	rpl30	ENSSDUP00000028342	ENSSDUP00000015965	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L30.	0.996
ENSSDUP00000028342	rpl31	ENSSDUP00000028342	ENSSDUP00000030284	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L31.	0.996
ENSSDUP00000028342	rpl32	ENSSDUP00000028342	ENSSDUP00000021027	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L32.	0.996
ENSSDUP00000028342	rpl35a	ENSSDUP00000028342	ENSSDUP00000007758	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L35a.	0.995
ENSSDUP00000028342	rpl4	ENSSDUP00000028342	ENSSDUP00000011049	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L4.	0.978
ENSSDUP00000028342	rpl6	ENSSDUP00000028342	ENSSDUP00000031988	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L6.	0.995
ENSSDUP00000028342	rpl9	ENSSDUP00000028342	ENSSDUP00000031275	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L9.	0.979
ENSSDUP00000028342	rplp1	ENSSDUP00000028342	ENSSDUP00000017389	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
LOC111219798	ENSSDUP00000028342	ENSSDUP00000029463	ENSSDUP00000028342	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.980
LOC111219798	LOC111226661	ENSSDUP00000029463	ENSSDUP00000013440	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L26.	0.996
LOC111219798	LOC111240272	ENSSDUP00000029463	ENSSDUP00000013641	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribos_L4_asso_C domain-containing protein.	0.981
LOC111219798	LOC111240302	ENSSDUP00000029463	ENSSDUP00000014306	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal_L16 domain-containing protein.	0.960