STRINGSTRING
abcf1 abcf1 rpl6 rpl6 Rps29 Rps29 LOC111236478 LOC111236478 RPL19 RPL19 rpl31 rpl31 LOC111219798 LOC111219798 RPL7A RPL7A BTF3L4 BTF3L4 rps23 rps23 LOC111224707 LOC111224707 rpl32 rpl32 nufip2 nufip2 rps28 rps28 rpl18a rpl18a rpl30 rpl30 rpl36 rpl36 btf3 btf3 rpl24 rpl24 LOC111232164 LOC111232164 rps26 rps26
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
abcf1ATP-binding cassette, sub-family F (GCN20), member 1. (764 aa)
rpl6Ribosomal protein L6. (257 aa)
Rps29Ribosomal protein S29. (89 aa)
LOC111236478Transcription factor BTF3; Belongs to the NAC-beta family. (203 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
rpl31Ribosomal protein L31. (124 aa)
LOC111219798Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
RPL7ARibosomal protein L7a. (266 aa)
BTF3L4Transcription factor BTF3; Belongs to the NAC-beta family. (158 aa)
rps23Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
LOC111224707Si:ch211-214j24.10. (296 aa)
rpl32Ribosomal protein L32. (135 aa)
nufip2Nuclear FMR1 interacting protein 2. (628 aa)
rps28Ribosomal protein S28. (53 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
rpl30Ribosomal protein L30. (116 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
btf3Transcription factor BTF3; Belongs to the NAC-beta family. (162 aa)
rpl24Ribosomal protein L24. (157 aa)
LOC111232164Transcription factor BTF3; Belongs to the NAC-beta family. (184 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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