122 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl19	Mitochondrial ribosomal protein L19. (283 aa)
	LOC111224111	Uncharacterized protein. (154 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (176 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (201 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	mrpl14	Mitochondrial ribosomal protein L14. (148 aa)
	mrpl21	Uncharacterized protein. (195 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (315 aa)
	mrps27	Mitochondrial ribosomal protein S27. (416 aa)
	ENSSDUP00000002477	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (126 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	mrps7	Mitochondrial ribosomal protein S7. (229 aa)
	mrpl47	Mitochondrial ribosomal protein L47. (259 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	mrps26	Mitochondrial ribosomal protein S26. (207 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (189 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (297 aa)
	mrpl37	Mitochondrial ribosomal protein L37. (432 aa)
	mrpl22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	RPL36A	Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
	Mrps6	Mitochondrial ribosomal protein S6. (108 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	ENSSDUP00000007813	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (92 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (274 aa)
	mcts1	Malignant T-cell-amplified sequence. (182 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (145 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (129 aa)
	dap3	Death associated protein 3. (398 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (258 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (159 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (135 aa)
	mrps2	Mitochondrial ribosomal protein S2. (269 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	Ppp1r26	Uncharacterized protein. (1170 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	rpl4	Ribosomal protein L4. (242 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (205 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (297 aa)
	mrpl46	Mitochondrial ribosomal protein L46. (294 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (191 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	mrpl15	Mitochondrial ribosomal protein L15. (304 aa)
	mrpl38	Mitochondrial ribosomal protein L38. (387 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (251 aa)
	LOC111235809	Ribosomal protein S19. (187 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
	mpv17l2	MPV17 mitochondrial membrane protein-like 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (215 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	mrpl54	Mitochondrial ribosomal protein L54. (137 aa)
	mrps18b	Mitochondrial ribosomal protein S18B. (253 aa)
	Rps29	Ribosomal protein S29. (89 aa)
	LOC111226661	Ribosomal protein L26. (178 aa)
	LOC111240272	Ribos_L4_asso_C domain-containing protein. (234 aa)
	mrps15	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (252 aa)
	ENSSDUP00000013916	40S ribosomal protein S27. (91 aa)
	mrps22	Mitochondrial ribosomal protein S22. (341 aa)
	mrpl10	Mitochondrial ribosomal protein L10. (249 aa)
	mrps31	Mitochondrial ribosomal protein S31. (379 aa)
	LOC111240302	Ribosomal_L16 domain-containing protein. (119 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	mrps9	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (385 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (108 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	mrpl58	Mitochondrial ribosomal protein L58. (189 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	mrps18a	Mitochondrial ribosomal protein S18A. (181 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (184 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (175 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	mrpl43	Mitochondrial ribosomal protein L43. (151 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (125 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
	rps28	Ribosomal protein S28. (53 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (201 aa)
	mrps25	Mitochondrial ribosomal protein S25. (172 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (168 aa)
	rpl35	Ribosomal protein L35. (129 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (195 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (189 aa)
	RPS19	Ribosomal protein S19. (152 aa)
	mrpl48	Mitochondrial ribosomal protein L48. (212 aa)
	mrps16	Mitochondrial ribosomal protein S16. (138 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	mrps18c	Mitochondrial ribosomal protein S18C. (128 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	mrpl13	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (179 aa)
	mrps17	Mitochondrial ribosomal protein S17. (148 aa)
	LOC111229036	Mitochondrial transcription termination factor 4. (271 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (210 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	mrps33	Mitochondrial ribosomal protein S33. (106 aa)
	mrps21	Mitochondrial ribosomal protein S21. (97 aa)
	ENSSDUP00000025757	Uncharacterized protein. (59 aa)
	ccdc32	Coiled-coil domain containing 32. (196 aa)
	mrps14	Mitochondrial ribosomal protein S14. (138 aa)
	mrps10	Mitochondrial ribosomal protein S10. (210 aa)
	LOC111228634	Mitochondrial ribosomal protein L23. (154 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	mrps5	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (405 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	mrps12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	ENSSDUP00000028342	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	LOC111219798	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	RPS17	Ribosomal protein S17. (134 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (354 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	mrps30	Mitochondrial ribosomal protein S30. (442 aa)
	rpl9	Ribosomal protein L9. (241 aa)
	mrpl55	Zgc:171480. (147 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
	rpl6	Ribosomal protein L6. (257 aa)
	mrpl40	Mitochondrial ribosomal protein L40. (204 aa)
	mrps35	Mitochondrial ribosomal protein S35. (341 aa)
	mrps24	Mitochondrial ribosomal protein S24. (171 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1382 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000002477	ENSSDUP00000025757	ENSSDUP00000002477	ENSSDUP00000025757	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
ENSSDUP00000002477	LOC111226661	ENSSDUP00000002477	ENSSDUP00000013440	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L26.	0.991
ENSSDUP00000002477	LOC111228634	ENSSDUP00000002477	ENSSDUP00000027102	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L23.	0.993
ENSSDUP00000002477	LOC111229036	ENSSDUP00000002477	ENSSDUP00000024443	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial transcription termination factor 4.	0.632
ENSSDUP00000002477	LOC111240272	ENSSDUP00000002477	ENSSDUP00000013641	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribos_L4_asso_C domain-containing protein.	0.967
ENSSDUP00000002477	LOC111240302	ENSSDUP00000002477	ENSSDUP00000014306	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L16 domain-containing protein.	0.960
ENSSDUP00000002477	MRPL49	ENSSDUP00000002477	ENSSDUP00000018914	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L49.	0.996
ENSSDUP00000002477	Mrps6	ENSSDUP00000002477	ENSSDUP00000007035	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein S6.	0.999
ENSSDUP00000002477	Ppp1r26	ENSSDUP00000002477	ENSSDUP00000010236	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.981
ENSSDUP00000002477	RPS17	ENSSDUP00000002477	ENSSDUP00000029597	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S17.	0.756
ENSSDUP00000002477	RPS20	ENSSDUP00000002477	ENSSDUP00000007734	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S20.	0.991
ENSSDUP00000002477	Rps29	ENSSDUP00000002477	ENSSDUP00000013176	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S29.	0.978
ENSSDUP00000002477	ccdc32	ENSSDUP00000002477	ENSSDUP00000026328	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Coiled-coil domain containing 32.	0.787
ENSSDUP00000002477	dap3	ENSSDUP00000002477	ENSSDUP00000008812	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Death associated protein 3.	0.990
ENSSDUP00000002477	mrpl10	ENSSDUP00000002477	ENSSDUP00000014058	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L10.	0.904
ENSSDUP00000002477	mrpl11	ENSSDUP00000002477	ENSSDUP00000025266	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSSDUP00000002477	mrpl12	ENSSDUP00000002477	ENSSDUP00000019993	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L12.	0.999
ENSSDUP00000002477	mrpl13	ENSSDUP00000002477	ENSSDUP00000022674	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSSDUP00000002477	mrpl14	ENSSDUP00000002477	ENSSDUP00000001887	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L14.	0.965
ENSSDUP00000002477	mrpl15	ENSSDUP00000002477	ENSSDUP00000012097	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L15.	0.999