STRINGSTRING
rfc5 rfc5 rfc2 rfc2 psmc5 psmc5 rfc4 rfc4 LOC111226315 LOC111226315 rfc1 rfc1 lonp2 lonp2 clpx clpx wrnip1 wrnip1 LOC111218505 LOC111218505 fignl1 fignl1 katnal2 katnal2 Fign Fign pex6 pex6 chtf18 chtf18 psmc2 psmc2 LOC111235932 LOC111235932 nav3 nav3 spata5l1 spata5l1 nvl nvl vcp vcp atad1 atad1 LOC111230648 LOC111230648 psmc4 psmc4 atad2 atad2 FIGNL2 FIGNL2 katna1 katna1 LOC111220290 LOC111220290 ENSSDUP00000011938 ENSSDUP00000011938 ATAD3A ATAD3A pex1 pex1 LOC111229268 LOC111229268 LOC111218478 LOC111218478 atad2b atad2b VPS4B VPS4B LOC111224329 LOC111224329 LOC111218464 LOC111218464 SPATA5 SPATA5 spg7 spg7 afg3l2 afg3l2 psmc1 psmc1 LOC111223780 LOC111223780 lonp1 lonp1 trip13 trip13 LOC111229114 LOC111229114 vps4a vps4a spast spast atad5 atad5 LOC111231773 LOC111231773 orc1 orc1 cdc6 cdc6 psmc6 psmc6 psmc3 psmc3 LOC111237687 LOC111237687 CLPB CLPB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfc5Replication factor C (activator 1) 5. (335 aa)
rfc2Replication factor C (activator 1) 2. (387 aa)
psmc5Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (406 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
LOC111226315Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
rfc1Replication factor C subunit 1. (1181 aa)
lonp2Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (843 aa)
clpxCaseinolytic mitochondrial matrix peptidase chaperone subunit b. (624 aa)
wrnip1WRN helicase interacting protein 1. (607 aa)
LOC111218505AAA domain-containing protein; Belongs to the AAA ATPase family. (688 aa)
fignl1Fidgetin-like 1; Belongs to the AAA ATPase family. (644 aa)
katnal2Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. (518 aa)
FignFidgetin; Belongs to the AAA ATPase family. (753 aa)
pex6Peroxisomal biogenesis factor 6. (1063 aa)
chtf18CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (877 aa)
psmc2Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
LOC111235932Si:ch1073-174d20.2; Belongs to the AAA ATPase family. (667 aa)
nav3Neuron navigator 3. (2319 aa)
spata5l1Spermatogenesis associated 5-like 1. (748 aa)
nvlNuclear VCP like. (867 aa)
vcpValosin containing protein; Belongs to the AAA ATPase family. (806 aa)
atad1ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family. (364 aa)
LOC111230648Bromo domain-containing protein. (1107 aa)
psmc4Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (441 aa)
atad2Bromo domain-containing protein. (1355 aa)
FIGNL2Fidgetin like 2. (697 aa)
katna1Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. (488 aa)
LOC111220290N-ethylmaleimide-sensitive factor b. (746 aa)
ENSSDUP00000011938AAA domain-containing protein; Belongs to the AAA ATPase family. (764 aa)
ATAD3AATPase family AAA domain containing 3A. (687 aa)
pex1Peroxisomal biogenesis factor 1. (1211 aa)
LOC111229268Zgc:136908; Belongs to the AAA ATPase family. (708 aa)
LOC111218478Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. (496 aa)
atad2bATPase family AAA domain containing 2B. (1455 aa)
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (445 aa)
LOC111224329YME1-like 1a. (722 aa)
LOC111218464BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family. (420 aa)
SPATA5Spermatogenesis associated 5. (903 aa)
spg7SPG7 matrix AAA peptidase subunit, paraplegin. (806 aa)
afg3l2AFG3-like AAA ATPase 2. (798 aa)
psmc1Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (455 aa)
LOC111223780N-ethylmaleimide-sensitive factor a. (748 aa)
lonp1Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1009 aa)
trip13Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (423 aa)
LOC111229114YME1-like 1b. (721 aa)
vps4aVacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
spastSpastin; Belongs to the AAA ATPase family. (464 aa)
atad5ATPase family AAA domain containing 5a. (1852 aa)
LOC111231773ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family. (389 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (832 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (571 aa)
psmc6Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
psmc3Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (427 aa)
LOC111237687ATPase family AAA domain containing 5b. (887 aa)
CLPBClpB homolog, mitochondrial AAA ATPase chaperonin. (312 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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