11 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubb	Uncharacterized protein. (153 aa)
	LOC111230038	Ubiquitin like 4A. (156 aa)
	ubfd1	Ubiquitin family domain containing 1. (287 aa)
	ubc	Uncharacterized protein. (748 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (470 aa)
	LOC111228782	Ubiquitin A-52 residue ribosomal protein fusion product 1. (132 aa)
	LOC111223799	Ubiquitin-like domain-containing protein. (94 aa)
	LOC111220908	BCL2 associated athanogene 6, like. (1192 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC111235685	NEDD8 ubiquitin like modifier. (129 aa)
	rps27a	Ribosomal protein S27a. (156 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111220908	LOC111230038	ENSSDUP00000015238	ENSSDUP00000027254	BCL2 associated athanogene 6, like.	Ubiquitin like 4A.	0.914
LOC111220908	ubb	ENSSDUP00000015238	ENSSDUP00000009754	BCL2 associated athanogene 6, like.	Uncharacterized protein.	0.448
LOC111220908	ubc	ENSSDUP00000015238	ENSSDUP00000023286	BCL2 associated athanogene 6, like.	Uncharacterized protein.	0.448
LOC111223799	LOC111228782	ENSSDUP00000016406	ENSSDUP00000018383	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.836
LOC111223799	LOC111230038	ENSSDUP00000016406	ENSSDUP00000027254	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.585
LOC111223799	rps27a	ENSSDUP00000016406	ENSSDUP00000004225	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.920
LOC111223799	uba52	ENSSDUP00000016406	ENSSDUP00000013443	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.836
LOC111223799	ubb	ENSSDUP00000016406	ENSSDUP00000009754	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.773
LOC111223799	ubc	ENSSDUP00000016406	ENSSDUP00000023286	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.765
LOC111223799	ubfd1	ENSSDUP00000016406	ENSSDUP00000025878	Ubiquitin-like domain-containing protein.	Ubiquitin family domain containing 1.	0.561
LOC111223799	usp14	ENSSDUP00000016406	ENSSDUP00000023066	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.652
LOC111228782	LOC111223799	ENSSDUP00000018383	ENSSDUP00000016406	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.836
LOC111228782	LOC111230038	ENSSDUP00000018383	ENSSDUP00000027254	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin like 4A.	0.757
LOC111228782	LOC111235685	ENSSDUP00000018383	ENSSDUP00000009036	Ubiquitin A-52 residue ribosomal protein fusion product 1.	NEDD8 ubiquitin like modifier.	0.841
LOC111228782	rps27a	ENSSDUP00000018383	ENSSDUP00000004225	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.993
LOC111228782	uba52	ENSSDUP00000018383	ENSSDUP00000013443	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111228782	ubb	ENSSDUP00000018383	ENSSDUP00000009754	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.925
LOC111228782	ubc	ENSSDUP00000018383	ENSSDUP00000023286	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.924
LOC111228782	ubfd1	ENSSDUP00000018383	ENSSDUP00000025878	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin family domain containing 1.	0.724
LOC111228782	usp14	ENSSDUP00000018383	ENSSDUP00000023066	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin carboxyl-terminal hydrolase.	0.940