STRINGSTRING
LOC111230150 LOC111230150 rps21 rps21 LOC111221564 LOC111221564 rpl23 rpl23 rps8 rps8 rpl34 rpl34 srp72 srp72 LOC111238363 LOC111238363 rps26 rps26 rpl18 rpl18 RPL7A RPL7A rpl4 rpl4 rps7 rps7 rps2 rps2 RPL3L RPL3L tram2 tram2 LOC111224111 LOC111224111 rps13 rps13 rpl13 rpl13 rpl14 rpl14 RPL27A RPL27A rpl37a rpl37a rps6 rps6 LOC111233766 LOC111233766 rps27a rps27a LOC111221496 LOC111221496 rpl37 rpl37 ssr1 ssr1 rps14 rps14 rpl6 rpl6 rplp0 rplp0 RPL19 RPL19 LOC111217263 LOC111217263 rpl9 rpl9 RPL5-2 RPL5-2 LOC111236507 LOC111236507 rpl31 rpl31 LOC111219392 LOC111219392 rpl27 rpl27 rpn1 rpn1 LOC111217524 LOC111217524 sec61a1 sec61a1 RPS17 RPS17 rsrc1 rsrc1 LOC111219798 LOC111219798 rps15a rps15a rps23 rps23 ENSSDUP00000028342 ENSSDUP00000028342 rpl12 rpl12 rps3a rps3a rps5 rps5 srp68 srp68 rps10 rps10 srprb srprb srp54 srp54 LOC111223280 LOC111223280 rps16 rps16 rps11 rps11 LOC111233624 LOC111233624 rpl13a rpl13a ENSSDUP00000023177 ENSSDUP00000023177 ENSSDUP00000022981 ENSSDUP00000022981 mrnip mrnip kxd1 kxd1 rpl29 rpl29 rpl17 rpl17 rpl32 rpl32 rpl28 rpl28 rps4x rps4x rpl21 rpl21 RPS19 RPS19 arl6ip1 arl6ip1 rsad1 rsad1 rpl35 rpl35 srpra srpra rpl10 rpl10 rpl38 rpl38 rps12 rps12 tram1 tram1 srp19 srp19 rps15 rps15 rps28 rps28 rplp1 rplp1 rpl7 rpl7 rpl18a rpl18a rps18 rps18 ssr3 ssr3 RPL5 RPL5 rpl30 rpl30 ssr4 ssr4 rpl15 rpl15 rpn2 rpn2 rps24 rps24 rpl8 rpl8 LOC111240302 LOC111240302 srp14 srp14 ENSSDUP00000013916 ENSSDUP00000013916 LOC111240272 LOC111240272 ENSSDUP00000013579 ENSSDUP00000013579 LOC111226661 LOC111226661 rpl36 rpl36 Rps29 Rps29 ENSSDUP00000012997 ENSSDUP00000012997 ssr2 ssr2 ENSSDUP00000012814 ENSSDUP00000012814 rpsa rpsa LOC111235809 LOC111235809 srp9 srp9 rps9 rps9 rpl7l1 rpl7l1 rpl11 rpl11 rpl22l1 rpl22l1 rpl23a rpl23a rps3 rps3 RPL36A RPL36A rnpepl1 rnpepl1 rpl39 rpl39 RPS20 RPS20 rpl35a rpl35a ENSSDUP00000007813 ENSSDUP00000007813 rpl24 rpl24
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC11123015040S ribosomal protein S27. (89 aa)
rps2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
LOC111221564Plug_translocon domain-containing protein. (476 aa)
rpl23Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (213 aa)
rpl34Ribosomal protein L34. (123 aa)
srp72Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family. (684 aa)
LOC111238363Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
rpl18Ribosomal protein L18. (156 aa)
RPL7ARibosomal protein L7a. (266 aa)
rpl4Ribosomal protein L4. (242 aa)
rps740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (205 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (297 aa)
RPL3LRibosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
tram2Translocating chain-associated membrane protein; Belongs to the TRAM family. (369 aa)
LOC111224111Uncharacterized protein. (154 aa)
rps13Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (201 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
rpl14Ribosomal protein L14. (136 aa)
RPL27ARibosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
rpl37aRibosomal protein L37a. (91 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
LOC111233766Uncharacterized protein. (130 aa)
rps27aRibosomal protein S27a. (156 aa)
LOC111221496Uncharacterized protein. (334 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (118 aa)
ssr1Signal sequence receptor, alpha. (293 aa)
rps14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
rpl6Ribosomal protein L6. (257 aa)
rplp0Ribosomal protein, large, P0. (253 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
LOC111217263Translocating chain-associated membrane protein; Belongs to the TRAM family. (371 aa)
rpl9Ribosomal protein L9. (241 aa)
RPL5-2Ribosomal protein L5b. (371 aa)
LOC111236507NAD(P)-bd_dom domain-containing protein. (219 aa)
rpl31Ribosomal protein L31. (124 aa)
LOC111219392Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
rpn1Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...] (600 aa)
LOC111217524Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
sec61a1Plug_translocon domain-containing protein. (508 aa)
RPS17Ribosomal protein S17. (134 aa)
rsrc1Arginine/serine-rich coiled-coil 1. (228 aa)
LOC111219798Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
rps15aRibosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (164 aa)
rps23Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
ENSSDUP0000002834260S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
rps5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
srp68Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (592 aa)
rps10Ribosomal protein S10. (178 aa)
srprbSRP receptor subunit beta. (293 aa)
srp54Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
LOC11122328040S ribosomal protein S27. (84 aa)
rps16Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (210 aa)
LOC111233624Ribosomal protein L22. (129 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
ENSSDUP00000023177Uncharacterized protein. (121 aa)
ENSSDUP00000022981Uncharacterized protein. (1351 aa)
mrnipUncharacterized protein. (321 aa)
kxd1KxDL motif containing 1. (184 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
rpl17Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
rpl32Ribosomal protein L32. (135 aa)
rpl28Ribosomal protein L28. (137 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
rpl21Ribosomal protein L21. (160 aa)
RPS19Ribosomal protein S19. (152 aa)
arl6ip1ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (453 aa)
rpl35Ribosomal protein L35. (129 aa)
srpraSRP receptor subunit alpha. (704 aa)
rpl10Ribosomal protein L10. (215 aa)
rpl38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (193 aa)
tram1Translocating chain-associated membrane protein; Belongs to the TRAM family. (370 aa)
srp19Signal recognition particle 19. (153 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (201 aa)
rps28Ribosomal protein S28. (53 aa)
rplp1Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
rpl7Ribosomal protein L7. (260 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
ssr3Signal sequence receptor, gamma. (185 aa)
RPL5Ribosomal protein L5. (298 aa)
rpl30Ribosomal protein L30. (116 aa)
ssr4Signal sequence receptor, delta. (167 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
rpn2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...] (631 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
rpl8Ribosomal protein L8. (257 aa)
LOC111240302Ribosomal_L16 domain-containing protein. (119 aa)
srp14Signal recognition particle 14. (110 aa)
ENSSDUP0000001391640S ribosomal protein S27. (91 aa)
LOC111240272Ribos_L4_asso_C domain-containing protein. (234 aa)
ENSSDUP00000013579Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
LOC111226661Ribosomal protein L26. (178 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
Rps29Ribosomal protein S29. (89 aa)
ENSSDUP00000012997Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (102 aa)
ssr2Translocon-associated protein subunit beta; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. (196 aa)
ENSSDUP0000001281440S ribosomal protein S27. (89 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
LOC111235809Ribosomal protein S19. (187 aa)
srp9Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
rpl7l1Ribosomal protein L7-like 1. (247 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (200 aa)
rpl22l1Ribosomal protein L22-like 1. (129 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
rps3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
RPL36ARibosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
rnpepl1Arginyl aminopeptidase like 1. (717 aa)
rpl39Ribosomal protein L39. (76 aa)
RPS20Ribosomal protein S20. (119 aa)
rpl35aRibosomal protein L35a. (110 aa)
ENSSDUP0000000781340S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (92 aa)
rpl24Ribosomal protein L24. (157 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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