20 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	irak1	Interleukin-1 receptor-associated kinase 1. (738 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	ENSSDUP00000009213	GSAP-16 domain-containing protein. (162 aa)
	LOC111238330	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	ubb	Uncharacterized protein. (153 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (600 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	LOC111228782	Ubiquitin A-52 residue ribosomal protein fusion product 1. (132 aa)
	LOC111218944	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (293 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (571 aa)
	sqstm1	Sequestosome 1. (413 aa)
	ubc	Uncharacterized protein. (748 aa)
	ENSSDUP00000023642	MYD88 innate immune signal transduction adaptor. (176 aa)
	LOC111220968	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC111219495	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (202 aa)
	LOC111217770	Nerve growth factor receptor a (TNFR superfamily, member 16). (288 aa)
	LOC111220001	Nerve growth factor receptor b. (422 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000009213	ENSSDUP00000023642	ENSSDUP00000009213	ENSSDUP00000023642	GSAP-16 domain-containing protein.	MYD88 innate immune signal transduction adaptor.	0.514
ENSSDUP00000009213	LOC111217770	ENSSDUP00000009213	ENSSDUP00000030963	GSAP-16 domain-containing protein.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.571
ENSSDUP00000009213	LOC111220968	ENSSDUP00000009213	ENSSDUP00000023653	GSAP-16 domain-containing protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.514
ENSSDUP00000009213	LOC111228782	ENSSDUP00000009213	ENSSDUP00000018383	GSAP-16 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.643
ENSSDUP00000009213	ikbkb	ENSSDUP00000009213	ENSSDUP00000031936	GSAP-16 domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.559
ENSSDUP00000009213	irak1	ENSSDUP00000009213	ENSSDUP00000027344	GSAP-16 domain-containing protein.	Interleukin-1 receptor-associated kinase 1.	0.685
ENSSDUP00000009213	prkci	ENSSDUP00000009213	ENSSDUP00000016769	GSAP-16 domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.878
ENSSDUP00000009213	rps27a	ENSSDUP00000009213	ENSSDUP00000004225	GSAP-16 domain-containing protein.	Ribosomal protein S27a.	0.829
ENSSDUP00000009213	traf6	ENSSDUP00000009213	ENSSDUP00000021100	GSAP-16 domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.962
ENSSDUP00000009213	uba52	ENSSDUP00000009213	ENSSDUP00000013443	GSAP-16 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.643
ENSSDUP00000009213	ubb	ENSSDUP00000009213	ENSSDUP00000009754	GSAP-16 domain-containing protein.	Uncharacterized protein.	0.855
ENSSDUP00000009213	ubc	ENSSDUP00000009213	ENSSDUP00000023286	GSAP-16 domain-containing protein.	Uncharacterized protein.	0.855
ENSSDUP00000023642	ENSSDUP00000009213	ENSSDUP00000023642	ENSSDUP00000009213	MYD88 innate immune signal transduction adaptor.	GSAP-16 domain-containing protein.	0.514
ENSSDUP00000023642	LOC111217770	ENSSDUP00000023642	ENSSDUP00000030963	MYD88 innate immune signal transduction adaptor.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.616
ENSSDUP00000023642	LOC111218944	ENSSDUP00000023642	ENSSDUP00000020615	MYD88 innate immune signal transduction adaptor.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.456
ENSSDUP00000023642	LOC111228782	ENSSDUP00000023642	ENSSDUP00000018383	MYD88 innate immune signal transduction adaptor.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.445
ENSSDUP00000023642	LOC111238330	ENSSDUP00000023642	ENSSDUP00000009339	MYD88 innate immune signal transduction adaptor.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.464
ENSSDUP00000023642	ikbkb	ENSSDUP00000023642	ENSSDUP00000031936	MYD88 innate immune signal transduction adaptor.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.464
ENSSDUP00000023642	irak1	ENSSDUP00000023642	ENSSDUP00000027344	MYD88 innate immune signal transduction adaptor.	Interleukin-1 receptor-associated kinase 1.	0.984
ENSSDUP00000023642	nfkbia	ENSSDUP00000023642	ENSSDUP00000024374	MYD88 innate immune signal transduction adaptor.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.464