49 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSDUP00000011831	Microfibril associated protein 2. (40 aa)
	bmp2	Bone morphogenetic protein 2b. (403 aa)
	emilin2	Elastin microfibril interfacer 2b. (999 aa)
	mfap3l	Microfibril associated protein 3 like. (417 aa)
	ENSSDUP00000009802	Uncharacterized protein. (1371 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (803 aa)
	bmp6	Bone morphogenetic protein 6. (433 aa)
	LOC111238903	Bone morphogenetic protein 16. (434 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (421 aa)
	MFAP3	Microfibril associated protein 3. (317 aa)
	LOC111225964	Uncharacterized protein. (1648 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (405 aa)
	bmp10	Bone morphogenetic protein 10. (489 aa)
	LTBP3	Latent transforming growth factor beta binding protein 3. (1241 aa)
	LOC111218927	Fibrillin 2b. (2668 aa)
	LOC111216899	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	FBLN2	Fibulin 2. (1212 aa)
	ENSSDUP00000000256	Elastin microfibril interfacer 3a. (583 aa)
	LOC111217416	Bone morphogenetic protein 7b. (427 aa)
	LOC111229618	Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (660 aa)
	vtn	Vitronectin a. (485 aa)
	EFEMP1	EGF containing fibulin extracellular matrix protein 1. (457 aa)
	ENSSDUP00000013582	Microfibril associated protein 5. (137 aa)
	LOC111227857	Growth differentiation factor 6a. (414 aa)
	FBLN1	Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (693 aa)
	LOC111221576	Fibulin 2. (1374 aa)
	ENSSDUP00000011840	Uncharacterized protein. (85 aa)
	gdf5	Growth differentiation factor 5. (641 aa)
	LOC111232504	Transforming growth factor beta; Belongs to the TGF-beta family. (419 aa)
	efemp2	EGF containing fibulin extracellular matrix protein 2a. (434 aa)
	fbln5	Fibulin 5. (426 aa)
	LOC111217133	Vitronectin b. (446 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (744 aa)
	LOC111221779	Bone morphogenetic protein 7a. (395 aa)
	LOC111237593	Uncharacterized protein. (394 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (789 aa)
	bmp5	Bone morphogenetic protein 5. (451 aa)
	ltbp1	Latent transforming growth factor beta binding protein 1. (1547 aa)
	LOC111217494	Integrin beta; Belongs to the integrin beta chain family. (786 aa)
	LOC111217549	Fibrinogen C-terminal domain-containing protein. (269 aa)
	EMILIN3	Elastin microfibril interfacer 3. (737 aa)
	FBN1	Fibrillin 1. (2814 aa)
	itgb5	Integrin beta; Belongs to the integrin beta chain family. (782 aa)
	LOC111238468	Transforming growth factor beta; Belongs to the TGF-beta family. (408 aa)
	MFAP4	Microfibril associated protein 4. (249 aa)
	bmp4	Bone morphogenetic protein 4. (403 aa)
	LOC111230068	CD4-1 molecule. (471 aa)
	LOC111219699	Fibrinogen C-terminal domain-containing protein. (239 aa)
	LOC111218037	Fibronectin 1a. (2270 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFEMP1	ENSSDUP00000011831	ENSSDUP00000013629	ENSSDUP00000011831	EGF containing fibulin extracellular matrix protein 1.	Microfibril associated protein 2.	0.420
EFEMP1	ENSSDUP00000011840	ENSSDUP00000013629	ENSSDUP00000011840	EGF containing fibulin extracellular matrix protein 1.	Uncharacterized protein.	0.420
EFEMP1	ENSSDUP00000013582	ENSSDUP00000013629	ENSSDUP00000013582	EGF containing fibulin extracellular matrix protein 1.	Microfibril associated protein 5.	0.493
EFEMP1	LOC111217549	ENSSDUP00000013629	ENSSDUP00000022522	EGF containing fibulin extracellular matrix protein 1.	Fibrinogen C-terminal domain-containing protein.	0.417
EFEMP1	LOC111219699	ENSSDUP00000013629	ENSSDUP00000016062	EGF containing fibulin extracellular matrix protein 1.	Fibrinogen C-terminal domain-containing protein.	0.417
EFEMP1	MFAP4	ENSSDUP00000013629	ENSSDUP00000020818	EGF containing fibulin extracellular matrix protein 1.	Microfibril associated protein 4.	0.417
ENSSDUP00000009802	LOC111216899	ENSSDUP00000009802	ENSSDUP00000001524	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.764
ENSSDUP00000009802	LOC111232504	ENSSDUP00000009802	ENSSDUP00000024405	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.568
ENSSDUP00000009802	LOC111238468	ENSSDUP00000009802	ENSSDUP00000021265	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.563
ENSSDUP00000009802	itgb6	ENSSDUP00000009802	ENSSDUP00000028613	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.550
ENSSDUP00000009802	itgb8	ENSSDUP00000009802	ENSSDUP00000009678	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.463
ENSSDUP00000009802	tgfb2	ENSSDUP00000009802	ENSSDUP00000006628	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.568
ENSSDUP00000009802	tgfb3	ENSSDUP00000009802	ENSSDUP00000004917	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.563
ENSSDUP00000011831	EFEMP1	ENSSDUP00000011831	ENSSDUP00000013629	Microfibril associated protein 2.	EGF containing fibulin extracellular matrix protein 1.	0.420
ENSSDUP00000011831	ENSSDUP00000013582	ENSSDUP00000011831	ENSSDUP00000013582	Microfibril associated protein 2.	Microfibril associated protein 5.	0.728
ENSSDUP00000011831	FBLN1	ENSSDUP00000011831	ENSSDUP00000013095	Microfibril associated protein 2.	Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.	0.405
ENSSDUP00000011831	FBLN2	ENSSDUP00000011831	ENSSDUP00000000804	Microfibril associated protein 2.	Fibulin 2.	0.405
ENSSDUP00000011831	FBN1	ENSSDUP00000011831	ENSSDUP00000022269	Microfibril associated protein 2.	Fibrillin 1.	0.468
ENSSDUP00000011831	LOC111217133	ENSSDUP00000011831	ENSSDUP00000026913	Microfibril associated protein 2.	Vitronectin b.	0.449
ENSSDUP00000011831	LOC111217549	ENSSDUP00000011831	ENSSDUP00000022522	Microfibril associated protein 2.	Fibrinogen C-terminal domain-containing protein.	0.492