122 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubb	Uncharacterized protein. (153 aa)
	LOC111220342	USP domain-containing protein; Belongs to the peptidase C19 family. (1311 aa)
	meiob	Methionine sulfoxide reductase B1b. (472 aa)
	ENSSDUP00000007641	RING-type domain-containing protein. (124 aa)
	ENSSDUP00000007565	Uncharacterized protein. (266 aa)
	ENSSDUP00000007459	Uncharacterized protein. (237 aa)
	LOC111224792	Uncharacterized protein. (610 aa)
	ENSSDUP00000007246	Uncharacterized protein. (250 aa)
	ENSSDUP00000007207	Uncharacterized protein. (202 aa)
	ENSSDUP00000009608	Uncharacterized protein. (441 aa)
	ENSSDUP00000007177	B30.2/SPRY domain-containing protein. (197 aa)
	LOC111230475	Uncharacterized protein. (565 aa)
	ENSSDUP00000006147	Uncharacterized protein. (550 aa)
	ENSSDUP00000005924	Uncharacterized protein. (326 aa)
	ENSSDUP00000005817	Uncharacterized protein. (242 aa)
	ENSSDUP00000005226	Uncharacterized protein. (295 aa)
	ENSSDUP00000005049	Uncharacterized protein. (253 aa)
	LOC111236662	Uncharacterized protein. (472 aa)
	ENSSDUP00000004374	Uncharacterized protein. (557 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC111224744	Uncharacterized protein. (540 aa)
	atad5	ATPase family AAA domain containing 5a. (1852 aa)
	ENSSDUP00000002341	Uncharacterized protein. (230 aa)
	ENSSDUP00000002318	RING-type domain-containing protein. (71 aa)
	LOC111221105	Uncharacterized protein. (556 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
	ENSSDUP00000001830	IG domain-containing protein. (159 aa)
	ENSSDUP00000001822	IG domain-containing protein. (152 aa)
	ENSSDUP00000001780	IG domain-containing protein. (226 aa)
	ENSSDUP00000001774	Uncharacterized protein. (132 aa)
	ENSSDUP00000001704	Uncharacterized protein. (225 aa)
	ENSSDUP00000001654	Uncharacterized protein. (260 aa)
	pold4	Si:dkey-28b4.7. (108 aa)
	rev1	REV1 DNA directed polymerase. (1431 aa)
	LOC111233819	Uncharacterized protein. (561 aa)
	LOC111239910	Ig-like domain-containing protein. (146 aa)
	rfc2	Replication factor C (activator 1) 2. (387 aa)
	rfc4	Replication factor C (activator 1) 4. (359 aa)
	LOC111237560	Uncharacterized protein. (443 aa)
	rfc1	Replication factor C subunit 1. (1181 aa)
	poli	Polymerase (DNA directed) iota. (728 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (491 aa)
	ENSSDUP00000002304	RING-type domain-containing protein. (123 aa)
	ENSSDUP00000014088	SCY domain-containing protein. (120 aa)
	ENSSDUP00000013669	RING-type domain-containing protein. (91 aa)
	LOC111233316	Uncharacterized protein. (467 aa)
	ENSSDUP00000013575	Uncharacterized protein. (319 aa)
	LOC111233872	Uncharacterized protein. (556 aa)
	ENSSDUP00000013564	Uncharacterized protein. (226 aa)
	LOC111233354	Ig-like domain-containing protein. (252 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
	rpa2	Replication protein A2. (278 aa)
	ENSSDUP00000012773	B30.2/SPRY domain-containing protein. (207 aa)
	LOC111235284	FinTRIM family, member 14-like. (507 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	ENSSDUP00000010037	Uncharacterized protein. (212 aa)
	ENSSDUP00000009916	Uncharacterized protein. (254 aa)
	ENSSDUP00000009895	Uncharacterized protein. (465 aa)
	ENSSDUP00000030125	B30.2/SPRY domain-containing protein. (279 aa)
	pclaf	PCNA clamp associated factor. (117 aa)
	ENSSDUP00000029593	Uncharacterized protein. (269 aa)
	LOC111239382	Uncharacterized protein. (557 aa)
	LOC111228782	Ubiquitin A-52 residue ribosomal protein fusion product 1. (132 aa)
	ENSSDUP00000019498	RING-type domain-containing protein. (187 aa)
	ENSSDUP00000019513	B30.2/SPRY domain-containing protein. (217 aa)
	ENSSDUP00000019534	Uncharacterized protein. (463 aa)
	ENSSDUP00000019548	Uncharacterized protein. (212 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	ENSSDUP00000020680	Uncharacterized protein. (455 aa)
	ENSSDUP00000020810	B30.2/SPRY domain-containing protein. (295 aa)
	ENSSDUP00000020878	Pyrin domain-containing protein. (100 aa)
	ENSSDUP00000021225	RING-type domain-containing protein. (163 aa)
	LOC111230960	FinTRIM family, member 67. (443 aa)
	ENSSDUP00000021334	RING-type domain-containing protein. (89 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
	ENSSDUP00000021662	B30.2/SPRY domain-containing protein. (220 aa)
	LOC111227887	Uncharacterized protein. (598 aa)
	ENSSDUP00000021694	Uncharacterized protein. (292 aa)
	ENSSDUP00000021723	Si:dkey-46i9.6. (225 aa)
	LOC111237550	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	LOC111238594	Bloodthirsty-related gene family, member 12. (572 aa)
	polk	Polymerase (DNA directed) kappa. (884 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (680 aa)
	ubc	Uncharacterized protein. (748 aa)
	pold1	DNA polymerase. (1121 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (880 aa)
	LOC111238106	Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1213 aa)
	LOC111222235	FinTRIM family, member 82. (574 aa)
	LOC111237687	ATPase family AAA domain containing 5b. (887 aa)
	usp31	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1286 aa)
	ENSSDUP00000026235	Uncharacterized protein. (545 aa)
	ENSSDUP00000026253	Uncharacterized protein. (564 aa)
	ENSSDUP00000026303	Uncharacterized protein. (396 aa)
	ENSSDUP00000026576	RING-type domain-containing protein. (91 aa)
	LOC111232972	Uncharacterized protein. (547 aa)
	ENSSDUP00000018093	B30.2/SPRY domain-containing protein. (266 aa)
	ENSSDUP00000027776	Uncharacterized protein. (231 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
	usp43	Ubiquitin specific peptidase 43a; Belongs to the peptidase C19 family. (1231 aa)
	ENSSDUP00000029177	B30.2/SPRY domain-containing protein. (199 aa)
	ENSSDUP00000029183	Uncharacterized protein. (204 aa)
	ENSSDUP00000029189	B30.2/SPRY domain-containing protein. (171 aa)
	ENSSDUP00000018078	Uncharacterized protein. (239 aa)
	ENSSDUP00000018060	Uncharacterized protein. (266 aa)
	ENSSDUP00000018056	Uncharacterized protein. (222 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
	rpa3	Replication protein A3. (122 aa)
	rcbtb2	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	ENSSDUP00000017783	Uncharacterized protein. (284 aa)
	ENSSDUP00000017328	RING-type domain-containing protein. (376 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
	ENSSDUP00000016335	Uncharacterized protein. (295 aa)
	ENSSDUP00000016144	Uncharacterized protein. (391 aa)
	ENSSDUP00000016000	RPA_C domain-containing protein. (250 aa)
	polh	Polymerase (DNA directed), eta. (690 aa)
	LOC111229296	Uncharacterized protein. (576 aa)
	ENSSDUP00000014891	Ig-like domain-containing protein. (296 aa)
	ENSSDUP00000014251	Tripartite motif containing 25, like. (447 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000014088	ENSSDUP00000016000	ENSSDUP00000014088	ENSSDUP00000016000	SCY domain-containing protein.	RPA_C domain-containing protein.	0.418
ENSSDUP00000014088	LOC111237687	ENSSDUP00000014088	ENSSDUP00000000533	SCY domain-containing protein.	ATPase family AAA domain containing 5b.	0.605
ENSSDUP00000014088	RPA1	ENSSDUP00000014088	ENSSDUP00000022462	SCY domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.413
ENSSDUP00000014088	atad5	ENSSDUP00000014088	ENSSDUP00000002767	SCY domain-containing protein.	ATPase family AAA domain containing 5a.	0.605
ENSSDUP00000014088	meiob	ENSSDUP00000014088	ENSSDUP00000007985	SCY domain-containing protein.	Methionine sulfoxide reductase B1b.	0.413
ENSSDUP00000014088	pcna	ENSSDUP00000014088	ENSSDUP00000004184	SCY domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.646
ENSSDUP00000014088	pold1	ENSSDUP00000014088	ENSSDUP00000023525	SCY domain-containing protein.	DNA polymerase.	0.841
ENSSDUP00000014088	pold2	ENSSDUP00000014088	ENSSDUP00000030358	SCY domain-containing protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.745
ENSSDUP00000014088	pole	ENSSDUP00000014088	ENSSDUP00000018018	SCY domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.974
ENSSDUP00000014088	pole2	ENSSDUP00000014088	ENSSDUP00000021487	SCY domain-containing protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.972
ENSSDUP00000014088	pole3	ENSSDUP00000014088	ENSSDUP00000027784	SCY domain-containing protein.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.975
ENSSDUP00000014088	polh	ENSSDUP00000014088	ENSSDUP00000015777	SCY domain-containing protein.	Polymerase (DNA directed), eta.	0.516
ENSSDUP00000014088	poli	ENSSDUP00000014088	ENSSDUP00000031056	SCY domain-containing protein.	Polymerase (DNA directed) iota.	0.516
ENSSDUP00000014088	polk	ENSSDUP00000014088	ENSSDUP00000021860	SCY domain-containing protein.	Polymerase (DNA directed) kappa.	0.632
ENSSDUP00000014088	rev1	ENSSDUP00000014088	ENSSDUP00000009158	SCY domain-containing protein.	REV1 DNA directed polymerase.	0.480
ENSSDUP00000014088	rfc1	ENSSDUP00000014088	ENSSDUP00000031244	SCY domain-containing protein.	Replication factor C subunit 1.	0.605
ENSSDUP00000014088	rfc2	ENSSDUP00000014088	ENSSDUP00000032108	SCY domain-containing protein.	Replication factor C (activator 1) 2.	0.698
ENSSDUP00000014088	rfc3	ENSSDUP00000014088	ENSSDUP00000019982	SCY domain-containing protein.	Replication factor C (activator 1) 3.	0.728
ENSSDUP00000014088	rfc4	ENSSDUP00000014088	ENSSDUP00000031399	SCY domain-containing protein.	Replication factor C (activator 1) 4.	0.701
ENSSDUP00000014088	rfc5	ENSSDUP00000014088	ENSSDUP00000023741	SCY domain-containing protein.	Replication factor C (activator 1) 5.	0.699