STRINGSTRING
ENSSDUP00000021729 ENSSDUP00000021729 ENSSDUP00000022019 ENSSDUP00000022019 ENSSDUP00000022246 ENSSDUP00000022246 rad1 rad1 RPA1 RPA1 ENSSDUP00000022496 ENSSDUP00000022496 ENSSDUP00000022505 ENSSDUP00000022505 hus1 hus1 rfc5 rfc5 LOC111230957 LOC111230957 LOC111218242 LOC111218242 ENSSDUP00000024652 ENSSDUP00000024652 ube2v2 ube2v2 ube2n ube2n LOC111230319 LOC111230319 babam2 babam2 rmi2 rmi2 rhno1 rhno1 top3a top3a tp53bp1 tp53bp1 ENSSDUP00000027840 ENSSDUP00000027840 LOC111238179 LOC111238179 LOC111236357 LOC111236357 rad50 rad50 LOC111237550 LOC111237550 atrip atrip mre11 mre11 ENSSDUP00000029876 ENSSDUP00000029876 brca1 brca1 exo1 exo1 uimc1 uimc1 rmi1 rmi1 rfc4 rfc4 rfc2 rfc2 ppp4c ppp4c ENSSDUP00000029566 ENSSDUP00000029566 RCBTB1 RCBTB1 blm blm atm atm ENSSDUP00000016000 ENSSDUP00000016000 ppp4r2 ppp4r2 rpa1 rpa1 atr atr ENSSDUP00000017647 ENSSDUP00000017647 ENSSDUP00000017713 ENSSDUP00000017713 rcbtb2 rcbtb2 rpa3 rpa3 LOC111221389 LOC111221389 ENSSDUP00000018183 ENSSDUP00000018183 ENSSDUP00000018600 ENSSDUP00000018600 ENSSDUP00000018853 ENSSDUP00000018853 SUMO3 SUMO3 ccna1 ccna1 rfc3 rfc3 rad9a rad9a sirt6 sirt6 ENSSDUP00000021155 ENSSDUP00000021155 ENSSDUP00000021373 ENSSDUP00000021373 rad9b rad9b timeless timeless ENSSDUP00000006700 ENSSDUP00000006700 LOC111221313 LOC111221313 ENSSDUP00000007129 ENSSDUP00000007129 ENSSDUP00000007300 ENSSDUP00000007300 pias4 pias4 ENSSDUP00000007804 ENSSDUP00000007804 LOC111224648 LOC111224648 rnf169 rnf169 ENSSDUP00000008454 ENSSDUP00000008454 Rbbp8 Rbbp8 ankrd11 ankrd11 ENSSDUP00000021478 ENSSDUP00000021478 abraxas1 abraxas1 rnf8 rnf8 nsd2 nsd2 rad17 rad17 ankrd12 ankrd12 ccna2 ccna2 kat5 kat5 babam1 babam1 topbp1 topbp1 rpa2 rpa2 ENSSDUP00000012931 ENSSDUP00000012931 cdk2 cdk2 dna2 dna2 ENSSDUP00000000054 ENSSDUP00000000054 ENSSDUP00000001025 ENSSDUP00000001025 ENSSDUP00000001040 ENSSDUP00000001040 LOC111235132 LOC111235132 Brcc3 Brcc3 ube2i ube2i sumo2 sumo2 tipin tipin
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSSDUP00000021729Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
ENSSDUP00000022019Histone domain-containing protein; Belongs to the histone H2B family. (116 aa)
ENSSDUP00000022246Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
rad1RAD1 homolog (S. pombe). (277 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (680 aa)
ENSSDUP00000022496Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
ENSSDUP00000022505Histone domain-containing protein; Belongs to the histone H2B family. (121 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (279 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
LOC111230957Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC111218242Small ubiquitin-related modifier. (95 aa)
ENSSDUP00000024652Endo/exonuclease/phosphatase domain-containing protein. (350 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
ube2nUbiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
LOC111230319UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
babam2BRISC and BRCA1 A complex member 2. (383 aa)
rmi2RecQ mediated genome instability 2. (166 aa)
rhno1Si:ch73-352p4.5. (262 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1045 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1488 aa)
ENSSDUP00000027840Uncharacterized protein; Belongs to the histone H2B family. (117 aa)
LOC111238179Uncharacterized protein. (416 aa)
LOC111236357Small ubiquitin-related modifier. (96 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
LOC111237550Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
atripUncharacterized protein. (802 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (696 aa)
ENSSDUP00000029876Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
brca1Uncharacterized protein. (1251 aa)
exo1Exonuclease 1. (797 aa)
uimc1RAP80_UIM domain-containing protein. (1088 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (732 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
rfc2Replication factor C (activator 1) 2. (387 aa)
ppp4cSerine/threonine-protein phosphatase. (311 aa)
ENSSDUP00000029566Histone H2B; Belongs to the histone H2B family. (114 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
blmBLM RecQ like helicase. (1392 aa)
atmNon-specific serine/threonine protein kinase. (2999 aa)
ENSSDUP00000016000RPA_C domain-containing protein. (250 aa)
ppp4r2Protein phosphatase 4, regulatory subunit 2b. (441 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2248 aa)
ENSSDUP00000017647Histone H2B; Belongs to the histone H2B family. (139 aa)
ENSSDUP00000017713annotation not available (93 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
rpa3Replication protein A3. (122 aa)
LOC111221389Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
ENSSDUP00000018183RecQ helicase-like 4. (749 aa)
ENSSDUP00000018600Histone H2B; Belongs to the histone H2B family. (114 aa)
ENSSDUP00000018853Endo/exonuclease/phosphatase domain-containing protein. (404 aa)
SUMO3Small ubiquitin-related modifier. (94 aa)
ccna1Cyclin A1; Belongs to the cyclin family. (410 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (389 aa)
sirt6Sirtuin 6. (350 aa)
ENSSDUP00000021155Reverse transcriptase domain-containing protein. (1217 aa)
ENSSDUP00000021373Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
rad9bRAD9 checkpoint clamp component B. (405 aa)
timelessTimeless circadian clock. (1255 aa)
ENSSDUP00000006700Ring finger protein 168. (397 aa)
LOC111221313Histone H2B; Belongs to the histone H2B family. (123 aa)
ENSSDUP00000007129Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSSDUP00000007300Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (90 aa)
pias4Protein inhibitor of activated STAT, 4a. (507 aa)
ENSSDUP00000007804Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC111224648UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
rnf169Ring finger protein 169. (597 aa)
ENSSDUP00000008454Reverse transcriptase domain-containing protein. (1306 aa)
Rbbp8SAE2 domain-containing protein. (86 aa)
ankrd11Ankyrin repeat domain 11. (2846 aa)
ENSSDUP00000021478Histone H2B; Belongs to the histone H2B family. (116 aa)
abraxas1Abraxas 1, BRCA1 A complex subunit. (361 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (560 aa)
nsd2Nuclear receptor binding SET domain protein 2. (1337 aa)
rad17RAD17 checkpoint clamp loader component. (635 aa)
ankrd12Ankyrin repeat domain 12. (1958 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (437 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (604 aa)
babam1BRISC and BRCA1 A complex member 1. (377 aa)
topbp1DNA topoisomerase II binding protein 1. (1519 aa)
rpa2Replication protein A2. (278 aa)
ENSSDUP00000012931ANK_REP_REGION domain-containing protein. (674 aa)
cdk2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
dna2DNA replication helicase/nuclease 2. (1406 aa)
ENSSDUP00000000054Histone H2B; Belongs to the histone H2B family. (131 aa)
ENSSDUP00000001025Histone H2B; Belongs to the histone H2B family. (116 aa)
ENSSDUP00000001040Uncharacterized protein; Belongs to the histone H2B family. (67 aa)
LOC111235132Ubiquitin-conjugating enzyme E2 variant 1. (147 aa)
Brcc3BRCA1/BRCA2-containing complex, subunit 3. (280 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (175 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (330 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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