STRINGSTRING
rps21 rps21 UTP14C UTP14C utp6 utp6 exosc5 exosc5 LOC111229738 LOC111229738 rrp1b rrp1b LOC111224111 LOC111224111 mphosph6 mphosph6 gnl3 gnl3 ltv1 ltv1 rps13 rps13 rpl13 rpl13 rpl14 rpl14 RPL27A RPL27A rpp38 rpp38 rpl37a rpl37a rps6 rps6 LOC111233766 LOC111233766 dhx37 dhx37 exosc9 exosc9 dis3l dis3l nip7 nip7 wdr36 wdr36 utp4 utp4 exosc1 exosc1 rps27a rps27a Ddx28 Ddx28 rpl22l1 rpl22l1 ftsj3 ftsj3 fcf1 fcf1 ddx52 ddx52 rpl23a rpl23a fbl fbl rps3 rps3 snu13 snu13 nol9 nol9 exosc2 exosc2 LOC111223603 LOC111223603 RPL36A RPL36A dis3l2 dis3l2 LOC111234954 LOC111234954 pelp1 pelp1 LOC111219195 LOC111219195 rpl39 rpl39 RPS20 RPS20 rpl35a rpl35a ENSSDUP00000007813 ENSSDUP00000007813 rpl24 rpl24 ncl ncl LOC111230150 LOC111230150 rcl1 rcl1 imp4 imp4 exosc10 exosc10 rpl23 rpl23 rps8 rps8 noc4l noc4l rpl34 rpl34 wdr75 wdr75 rpp40 rpp40 ENSSDUP00000009930 ENSSDUP00000009930 nob1 nob1 mphosph10 mphosph10 LOC111238363 LOC111238363 rps26 rps26 rpl18 rpl18 RPL7A RPL7A nop58 nop58 rpl4 rpl4 wdr12 wdr12 rps7 rps7 tbl3 tbl3 rps2 rps2 RPL3L RPL3L rpl11 rpl11 LOC111219836 LOC111219836 rpl7l1 rpl7l1 rps9 rps9 bysl bysl LOC111235809 LOC111235809 rpsa rpsa ENSSDUP00000012814 ENSSDUP00000012814 ENSSDUP00000012997 ENSSDUP00000012997 Rps29 Rps29 rpl36 rpl36 ddx49 ddx49 LOC111226661 LOC111226661 ENSSDUP00000013579 ENSSDUP00000013579 LOC111240272 LOC111240272 ENSSDUP00000013916 ENSSDUP00000013916 LOC111240302 LOC111240302 rpl8 rpl8 utp11 utp11 imp3 imp3 mcc mcc rps24 rps24 LOC111228823 LOC111228823 emg1 emg1 LOC111232832 LOC111232832 rpl15 rpl15 rpl30 rpl30 RPL5 RPL5 tsr1 tsr1 rps18 rps18 rpl18a rpl18a tex10 tex10 rpl7 rpl7 rplp1 rplp1 rps28 rps28 rps15 rps15 xrn2 xrn2 gnl3l gnl3l wdr46 wdr46 pes1 pes1 rps12 rps12 rpl38 rpl38 rpl10 rpl10 ebna1bp2 ebna1bp2 Las1l Las1l utp20 utp20 heatr1 heatr1 exosc8 exosc8 rbm28 rbm28 rpl35 rpl35 ENSSDUP00000019600 ENSSDUP00000019600 wdr3 wdr3 rsad1 rsad1 eri2 eri2 RPS19 RPS19 utp3 utp3 rpl21 rpl21 riok2 riok2 rps4x rps4x isg20l2 isg20l2 rpp30 rpp30 rpl28 rpl28 wdr18 wdr18 rpl32 rpl32 rtca rtca CSNK1D CSNK1D rpl17 rpl17 nop14 nop14 exosc3 exosc3 riok3 riok3 LOC111238112 LOC111238112 utp18 utp18 eri1 eri1 rpl29 rpl29 kxd1 kxd1 mrnip mrnip nol12 nol12 nol6 nol6 ENSSDUP00000023177 ENSSDUP00000023177 bms1 bms1 LOC111217216 LOC111217216 rrp7a rrp7a ENSSDUP00000023287 ENSSDUP00000023287 LOC111217180 LOC111217180 krr1 krr1 rpl13a rpl13a LOC111233624 LOC111233624 dis3 dis3 utp25 utp25 ddx47 ddx47 rps11 rps11 rps16 rps16 nol11 nol11 LOC111223280 LOC111223280 wdr43 wdr43 rrp36 rrp36 exosc4 exosc4 bud23 bud23 rps10 rps10 exosc7 exosc7 rrp9 rrp9 rps5 rps5 rps3a rps3a rpl12 rpl12 LOC111233669 LOC111233669 pno1 pno1 c1d c1d rps23 rps23 ngdn ngdn rps15a rps15a LOC111233695 LOC111233695 bop1 bop1 exosc6 exosc6 LOC111219798 LOC111219798 RPS17 RPS17 pdcd11 pdcd11 ddx21 ddx21 LOC111217524 LOC111217524 rpl27 rpl27 LOC111219392 LOC111219392 LOC111225165 LOC111225165 ENSSDUP00000030283 ENSSDUP00000030283 rpl31 rpl31 LOC111232009 LOC111232009 RPL5-2 RPL5-2 rpl9 rpl9 LOC111226348 LOC111226348 nop56 nop56 RPL19 RPL19 rplp0 rplp0 utp15 utp15 rpl6 rpl6 rps14 rps14 rexo4 rexo4 CSNK1D-2 CSNK1D-2 mtrex mtrex rpl37 rpl37
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
UTP14CUTP14C small subunit processome component. (711 aa)
utp6UTP6 small subunit processome component. (595 aa)
exosc5Exosome component 5. (258 aa)
LOC111229738Interferon stimulated exonuclease gene. (352 aa)
rrp1bUncharacterized protein. (939 aa)
LOC111224111Uncharacterized protein. (154 aa)
mphosph6M-phase phosphoprotein 6. (162 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (553 aa)
ltv1LTV1 ribosome biogenesis factor. (477 aa)
rps13Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (201 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
rpl14Ribosomal protein L14. (136 aa)
RPL27ARibosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
rpp38Ribonuclease P/MRP 38 subunit. (267 aa)
rpl37aRibosomal protein L37a. (91 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
LOC111233766Uncharacterized protein. (130 aa)
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1159 aa)
exosc9Exosome component 9. (425 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1049 aa)
nip760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
wdr36WD repeat domain 36. (867 aa)
utp4UTP4 small subunit processome component. (687 aa)
exosc1Exosome component 1. (194 aa)
rps27aRibosomal protein S27a. (156 aa)
Ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (567 aa)
rpl22l1Ribosomal protein L22-like 1. (129 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (858 aa)
fcf1FCF1 rRNA-processing protein. (204 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (660 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
fblFibrillarin. (327 aa)
rps3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
nol9Nucleolar protein 9. (579 aa)
exosc2Exosome component 2. (294 aa)
LOC111223603SUMO specific peptidase 3b. (569 aa)
RPL36ARibosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1074 aa)
LOC111234954Premelanosome protein b. (618 aa)
pelp1Proline, glutamate and leucine rich protein 1. (1279 aa)
LOC111219195Ribonuclease P and MRP subunit p25, b. (244 aa)
rpl39Ribosomal protein L39. (76 aa)
RPS20Ribosomal protein S20. (119 aa)
rpl35aRibosomal protein L35a. (110 aa)
ENSSDUP0000000781340S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (92 aa)
rpl24Ribosomal protein L24. (157 aa)
nclNucleolin. (630 aa)
LOC11123015040S ribosomal protein S27. (89 aa)
rcl1RNA terminal phosphate cyclase-like 1. (372 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
exosc10Exosome component 10. (892 aa)
rpl23Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (213 aa)
noc4lNucleolar complex associated 4 homolog. (530 aa)
rpl34Ribosomal protein L34. (123 aa)
wdr75WD repeat domain 75. (835 aa)
rpp40Ribonuclease P/MRP 40 subunit. (354 aa)
ENSSDUP00000009930RIO kinase 1 (yeast). (301 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (493 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (680 aa)
LOC111238363Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
rpl18Ribosomal protein L18. (156 aa)
RPL7ARibosomal protein L7a. (266 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (539 aa)
rpl4Ribosomal protein L4. (242 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
rps740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (205 aa)
tbl3Transducin (beta)-like 3. (938 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (297 aa)
RPL3LRibosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (200 aa)
LOC111219836Casein kinase 1, epsilon; Belongs to the protein kinase superfamily. (420 aa)
rpl7l1Ribosomal protein L7-like 1. (247 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
byslBystin-like. (436 aa)
LOC111235809Ribosomal protein S19. (187 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
ENSSDUP0000001281440S ribosomal protein S27. (89 aa)
ENSSDUP00000012997Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (102 aa)
Rps29Ribosomal protein S29. (89 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (490 aa)
LOC111226661Ribosomal protein L26. (178 aa)
ENSSDUP00000013579Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
LOC111240272Ribos_L4_asso_C domain-containing protein. (234 aa)
ENSSDUP0000001391640S ribosomal protein S27. (91 aa)
LOC111240302Ribosomal_L16 domain-containing protein. (119 aa)
rpl8Ribosomal protein L8. (257 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
mccUsher syndrome 1C binding protein 1. (702 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
LOC111228823Uncharacterized protein. (592 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (250 aa)
LOC111232832PWP2 small subunit processome component. (922 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
rpl30Ribosomal protein L30. (116 aa)
RPL5Ribosomal protein L5. (298 aa)
tsr1TSR1 ribosome maturation factor. (837 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
tex10Testis expressed 10. (943 aa)
rpl7Ribosomal protein L7. (260 aa)
rplp1Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
rps28Ribosomal protein S28. (53 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (201 aa)
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (879 aa)
gnl3lGuanine nucleotide binding protein-like 3 (nucleolar)-like. (569 aa)
wdr46WD repeat domain 46. (596 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (588 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (193 aa)
rpl38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
rpl10Ribosomal protein L10. (215 aa)
ebna1bp2EBNA1 binding protein 2. (316 aa)
Las1lUncharacterized protein. (130 aa)
utp20UTP20 small subunit processome component. (2737 aa)
heatr1HEAT repeat containing 1. (2112 aa)
exosc8Exosome component 8. (277 aa)
rbm28RNA binding motif protein 28. (514 aa)
rpl35Ribosomal protein L35. (129 aa)
ENSSDUP00000019600RRM domain-containing protein. (101 aa)
wdr3WD repeat domain 3. (941 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (453 aa)
eri2ERI1 exoribonuclease family member 2. (728 aa)
RPS19Ribosomal protein S19. (152 aa)
utp3UTP3 small subunit processome component. (471 aa)
rpl21Ribosomal protein L21. (160 aa)
riok2RIO kinase 2 (yeast). (519 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
isg20l2Interferon stimulated exonuclease gene 20 like 2. (352 aa)
rpp30Ribonuclease P/MRP 30 subunit. (275 aa)
rpl28Ribosomal protein L28. (137 aa)
wdr18WD repeat domain 18. (430 aa)
rpl32Ribosomal protein L32. (135 aa)
rtcaRNA 3'-terminal phosphate cyclase. (370 aa)
CSNK1DCasein kinase 1 delta; Belongs to the protein kinase superfamily. (449 aa)
rpl17Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
nop14NOP14 nucleolar protein homolog (yeast). (880 aa)
exosc3Exosome component 3. (244 aa)
riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (509 aa)
LOC111238112Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (429 aa)
utp18WD_REPEATS_REGION domain-containing protein. (537 aa)
eri1Exoribonuclease 1. (341 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
kxd1KxDL motif containing 1. (184 aa)
mrnipUncharacterized protein. (321 aa)
nol12Nucleolar protein 12. (235 aa)
nol6Nucleolar protein 6. (1210 aa)
ENSSDUP00000023177Uncharacterized protein. (121 aa)
bms1BMS1 ribosome biogenesis factor. (1228 aa)
LOC111217216Methyltransf_11 domain-containing protein. (226 aa)
rrp7aRibosomal RNA processing 7 homolog A. (282 aa)
ENSSDUP00000023287Uncharacterized protein. (1030 aa)
LOC111217180Methyltransferase like 27. (230 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (399 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
LOC111233624Ribosomal protein L22. (129 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (951 aa)
utp25UTP25 small subunit processor component. (771 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (524 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (210 aa)
rps16Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
nol11Nucleolar protein 11. (729 aa)
LOC11122328040S ribosomal protein S27. (84 aa)
wdr43WD repeat domain 43. (653 aa)
rrp36Ribosomal RNA processing 36. (360 aa)
exosc4Exosome component 4. (245 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (282 aa)
rps10Ribosomal protein S10. (178 aa)
exosc7Exosome component 7. (291 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (482 aa)
rps5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
LOC111233669Methyltransf_25 domain-containing protein. (258 aa)
pno1Partner of NOB1 homolog. (248 aa)
c1dC1D nuclear receptor corepressor. (155 aa)
rps23Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
ngdnNeuroguidin, EIF4E binding protein. (319 aa)
rps15aRibosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (164 aa)
LOC111233695Ribonuclease P/MRP 25 subunit-like. (219 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (670 aa)
exosc6Exosome component 6. (274 aa)
LOC111219798Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
RPS17Ribosomal protein S17. (134 aa)
pdcd11Programmed cell death 11. (1574 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (756 aa)
LOC111217524Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
LOC111219392Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
LOC111225165Zona pellucida glycoprotein d. (401 aa)
ENSSDUP00000030283Alba domain-containing protein. (166 aa)
rpl31Ribosomal protein L31. (124 aa)
LOC111232009Glomulin, FKBP associated protein b. (542 aa)
RPL5-2Ribosomal protein L5b. (371 aa)
rpl9Ribosomal protein L9. (241 aa)
LOC111226348Uncharacterized protein. (168 aa)
nop56NOP56 ribonucleoprotein homolog. (615 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
rplp0Ribosomal protein, large, P0. (253 aa)
utp15UTP15 small subunit processome component. (525 aa)
rpl6Ribosomal protein L6. (257 aa)
rps14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
rexo4REX4 homolog, 3'-5' exonuclease. (446 aa)
CSNK1D-2Casein kinase 1 delta; Belongs to the protein kinase superfamily. (405 aa)
mtrexMtr4 exosome RNA helicase. (1037 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (118 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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