67 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubc	Uncharacterized protein. (748 aa)
	psmd3	Proteasome 26S subunit, non-ATPase 3. (519 aa)
	psmd7	Proteasome 26S subunit, non-ATPase 7. (330 aa)
	psmd5	Proteasome 26S subunit, non-ATPase 5. (504 aa)
	LOC111239148	Proteasome subunit beta. (233 aa)
	LOC111232880	Human immunodeficiency virus type I enhancer binding protein 3b. (2042 aa)
	LOC111223824	Proteasome subunit beta. (317 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psmc3	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (427 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	PSMA4	Proteasome subunit alpha type. (261 aa)
	STUB1	STIP1 homology and U-box containing protein 1. (294 aa)
	psmc6	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
	LOC111219852	STIP1 homology and U-Box containing protein 1. (284 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (455 aa)
	LOC111237983	Proteasome subunit alpha type. (246 aa)
	PSMD11	PCI domain-containing protein. (422 aa)
	LOC111232566	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta. (930 aa)
	dlx6	Distal-less homeobox 6a. (246 aa)
	dlx5	Distal-less homeobox 5a. (283 aa)
	psmd1	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (963 aa)
	ENSSDUP00000006945	Uncharacterized protein. (267 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	nkx3-2	NK3 homeobox 2. (265 aa)
	cul1	Cullin 1b; Belongs to the cullin family. (776 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC111228182	Human immunodeficiency virus type I enhancer binding protein 3a. (1807 aa)
	LOC111237191	Proteasome 26S subunit, non-ATPase 4b. (375 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (259 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psma1	Proteasome subunit alpha type. (266 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (441 aa)
	psmd12	Proteasome 26S subunit, non-ATPase 12. (456 aa)
	psmd10	Proteasome 26S subunit, non-ATPase 10. (226 aa)
	psme3	Proteasome activator subunit 3. (256 aa)
	psme2	Proteasome activator subunit 2. (255 aa)
	LOC111232798	Proteasome subunit alpha type. (246 aa)
	runx2	Runt-related transcription factor. (463 aa)
	hivep2	Human immunodeficiency virus type I enhancer binding protein 2a. (2394 aa)
	Znf831	Uncharacterized protein. (1462 aa)
	psmf1	Proteasome inhibitor subunit 1. (277 aa)
	LOC111219851	Proteasome 26S subunit, non-ATPase 11b. (422 aa)
	psmc2	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
	ubb	Uncharacterized protein. (153 aa)
	hivep1	Human immunodeficiency virus type I enhancer binding protein 1. (2594 aa)
	LOC111225715	Uncharacterized protein. (738 aa)
	ppargc1a	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha. (771 aa)
	LOC111229617	Proteasome subunit alpha type. (261 aa)
	psmb8	Proteasome subunit beta. (276 aa)
	LOC111239429	Proteasome subunit beta 12. (217 aa)
	LOC111239430	Proteasome subunit beta. (216 aa)
	psmc5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (406 aa)
	psmd6	Proteasome 26S subunit, non-ATPase 6. (389 aa)
	LOC111221130	Proteasome subunit beta. (278 aa)
	psmd8	Proteasome 26S subunit, non-ATPase 8. (290 aa)
	LOC111217190	Homeobox domain-containing protein. (289 aa)
	skp2	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase. (437 aa)
	psmd9	Proteasome 26S subunit, non-ATPase 9. (212 aa)
	psmb2	Proteasome subunit beta. (199 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (164 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	psme1	Proteasome activator subunit 1. (255 aa)
	psmd13	Proteasome 26S subunit, non-ATPase 13. (392 aa)
	psmb7	Proteasome subunit beta. (277 aa)
	LOC111223275	Proteasome 26S subunit, non-ATPase 4a. (372 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000006945	LOC111219851	ENSSDUP00000006945	ENSSDUP00000014481	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 11b.	0.970
ENSSDUP00000006945	LOC111221130	ENSSDUP00000006945	ENSSDUP00000029852	Uncharacterized protein.	Proteasome subunit beta.	0.915
ENSSDUP00000006945	LOC111223275	ENSSDUP00000006945	ENSSDUP00000024228	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 4a.	0.950
ENSSDUP00000006945	LOC111223824	ENSSDUP00000006945	ENSSDUP00000016021	Uncharacterized protein.	Proteasome subunit beta.	0.909
ENSSDUP00000006945	LOC111229617	ENSSDUP00000006945	ENSSDUP00000032726	Uncharacterized protein.	Proteasome subunit alpha type.	0.942
ENSSDUP00000006945	LOC111232798	ENSSDUP00000006945	ENSSDUP00000014549	Uncharacterized protein.	Proteasome subunit alpha type.	0.938
ENSSDUP00000006945	LOC111237191	ENSSDUP00000006945	ENSSDUP00000002962	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 4b.	0.950
ENSSDUP00000006945	LOC111237983	ENSSDUP00000006945	ENSSDUP00000009324	Uncharacterized protein.	Proteasome subunit alpha type.	0.938
ENSSDUP00000006945	LOC111239148	ENSSDUP00000006945	ENSSDUP00000019291	Uncharacterized protein.	Proteasome subunit beta.	0.899
ENSSDUP00000006945	LOC111239429	ENSSDUP00000006945	ENSSDUP00000031910	Uncharacterized protein.	Proteasome subunit beta 12.	0.899
ENSSDUP00000006945	LOC111239430	ENSSDUP00000006945	ENSSDUP00000031905	Uncharacterized protein.	Proteasome subunit beta.	0.899
ENSSDUP00000006945	PSMA4	ENSSDUP00000006945	ENSSDUP00000001044	Uncharacterized protein.	Proteasome subunit alpha type.	0.942
ENSSDUP00000006945	PSMD11	ENSSDUP00000006945	ENSSDUP00000009242	Uncharacterized protein.	PCI domain-containing protein.	0.970
ENSSDUP00000006945	cul1	ENSSDUP00000006945	ENSSDUP00000004339	Uncharacterized protein.	Cullin 1b; Belongs to the cullin family.	0.645
ENSSDUP00000006945	psma1	ENSSDUP00000006945	ENSSDUP00000001775	Uncharacterized protein.	Proteasome subunit alpha type.	0.983
ENSSDUP00000006945	psma2	ENSSDUP00000006945	ENSSDUP00000015993	Uncharacterized protein.	Proteasome subunit alpha type.	0.978
ENSSDUP00000006945	psma3	ENSSDUP00000006945	ENSSDUP00000000528	Uncharacterized protein.	Proteasome subunit alpha type.	0.981
ENSSDUP00000006945	psma5	ENSSDUP00000006945	ENSSDUP00000002330	Uncharacterized protein.	Proteasome subunit alpha type.	0.987
ENSSDUP00000006945	psmb1	ENSSDUP00000006945	ENSSDUP00000000744	Uncharacterized protein.	Proteasome subunit beta.	0.964
ENSSDUP00000006945	psmb2	ENSSDUP00000006945	ENSSDUP00000028960	Uncharacterized protein.	Proteasome subunit beta.	0.980