14 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dag1	Dystroglycan 1. (908 aa)
	robo1	Roundabout, axon guidance receptor, homolog 1 (Drosophila). (1535 aa)
	lhx9	LIM homeobox 9. (399 aa)
	isl2	ISL LIM homeobox 2a. (333 aa)
	isl1	ISL LIM homeobox 1. (349 aa)
	ubb	Uncharacterized protein. (153 aa)
	ISL2	ISL LIM homeobox 2b. (359 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	lhx2	LIM homeobox 2b. (396 aa)
	ENSSDUP00000017016	Uncharacterized protein. (403 aa)
	ENSSDUP00000021057	Uncharacterized protein. (94 aa)
	LOC111217375	Peptidase S72 domain-containing protein. (910 aa)
	zswim8	Zinc finger, SWIM-type containing 8. (1973 aa)
	ubc	Uncharacterized protein. (748 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111217375	dag1	ENSSDUP00000021386	ENSSDUP00000024420	Peptidase S72 domain-containing protein.	Dystroglycan 1.	0.901
dag1	LOC111217375	ENSSDUP00000024420	ENSSDUP00000021386	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.901
rps27a	ubb	ENSSDUP00000004225	ENSSDUP00000009754	Ribosomal protein S27a.	Uncharacterized protein.	0.949
rps27a	ubc	ENSSDUP00000004225	ENSSDUP00000023286	Ribosomal protein S27a.	Uncharacterized protein.	0.954
ubb	rps27a	ENSSDUP00000009754	ENSSDUP00000004225	Uncharacterized protein.	Ribosomal protein S27a.	0.949
ubc	rps27a	ENSSDUP00000023286	ENSSDUP00000004225	Uncharacterized protein.	Ribosomal protein S27a.	0.954