15 items (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111220255	Protein kinase domain-containing protein. (674 aa)
	LOC111240091	Uncharacterized protein. (428 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (571 aa)
	ubc	Uncharacterized protein. (748 aa)
	ube2n	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	LOC111232929	Pellino E3 ubiquitin protein ligase 1. (427 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (738 aa)
	LOC111227467	Pellino E3 ubiquitin protein ligase 1b. (426 aa)
	LOC111234378	Component of inhibitor of nuclear factor kappa B kinase complex. (734 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	LOC111226027	Pellino E3 ubiquitin protein ligase family member 2. (424 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC111223592	Pellino E3 ubiquitin protein ligase family member 3. (472 aa)
	LOC111224648	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	ubb	Uncharacterized protein. (153 aa)

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111220255	LOC111223592	ENSSDUP00000011604	ENSSDUP00000006376	Protein kinase domain-containing protein.	Pellino E3 ubiquitin protein ligase family member 3.	0.435
LOC111220255	LOC111224648	ENSSDUP00000011604	ENSSDUP00000008102	Protein kinase domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.508
LOC111220255	LOC111226027	ENSSDUP00000011604	ENSSDUP00000002831	Protein kinase domain-containing protein.	Pellino E3 ubiquitin protein ligase family member 2.	0.435
LOC111220255	LOC111227467	ENSSDUP00000011604	ENSSDUP00000028271	Protein kinase domain-containing protein.	Pellino E3 ubiquitin protein ligase 1b.	0.435
LOC111220255	LOC111232929	ENSSDUP00000011604	ENSSDUP00000024934	Protein kinase domain-containing protein.	Pellino E3 ubiquitin protein ligase 1.	0.435
LOC111220255	LOC111234378	ENSSDUP00000011604	ENSSDUP00000032181	Protein kinase domain-containing protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.941
LOC111220255	LOC111240091	ENSSDUP00000011604	ENSSDUP00000012673	Protein kinase domain-containing protein.	Uncharacterized protein.	0.435
LOC111220255	ikbkb	ENSSDUP00000011604	ENSSDUP00000031936	Protein kinase domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.952
LOC111220255	irak1	ENSSDUP00000011604	ENSSDUP00000027344	Protein kinase domain-containing protein.	Interleukin-1 receptor-associated kinase 1.	0.965
LOC111220255	rps27a	ENSSDUP00000011604	ENSSDUP00000004225	Protein kinase domain-containing protein.	Ribosomal protein S27a.	0.628
LOC111220255	traf6	ENSSDUP00000011604	ENSSDUP00000021100	Protein kinase domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.985
LOC111220255	ubb	ENSSDUP00000011604	ENSSDUP00000009754	Protein kinase domain-containing protein.	Uncharacterized protein.	0.507
LOC111220255	ubc	ENSSDUP00000011604	ENSSDUP00000023286	Protein kinase domain-containing protein.	Uncharacterized protein.	0.507
LOC111220255	ube2n	ENSSDUP00000011604	ENSSDUP00000024903	Protein kinase domain-containing protein.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.508
LOC111223592	LOC111220255	ENSSDUP00000006376	ENSSDUP00000011604	Pellino E3 ubiquitin protein ligase family member 3.	Protein kinase domain-containing protein.	0.435
LOC111223592	LOC111224648	ENSSDUP00000006376	ENSSDUP00000008102	Pellino E3 ubiquitin protein ligase family member 3.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.543
LOC111223592	LOC111234378	ENSSDUP00000006376	ENSSDUP00000032181	Pellino E3 ubiquitin protein ligase family member 3.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.461
LOC111223592	ikbkb	ENSSDUP00000006376	ENSSDUP00000031936	Pellino E3 ubiquitin protein ligase family member 3.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.461
LOC111223592	irak1	ENSSDUP00000006376	ENSSDUP00000027344	Pellino E3 ubiquitin protein ligase family member 3.	Interleukin-1 receptor-associated kinase 1.	0.805
LOC111223592	traf6	ENSSDUP00000006376	ENSSDUP00000021100	Pellino E3 ubiquitin protein ligase family member 3.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.702