STRINGSTRING
rps6 rps6 magoh magoh LOC111224111 LOC111224111 rps13 rps13 rpl13 rpl13 rpl14 rpl14 RPL27A RPL27A rpl37a rpl37a smg8 smg8 LOC111233766 LOC111233766 rps27a rps27a rpl22l1 rpl22l1 rpl23a rpl23a rps3 rps3 RPL36A RPL36A rnpepl1 rnpepl1 rpl39 rpl39 RPS20 RPS20 upf3b upf3b rpl35a rpl35a ENSSDUP00000007813 ENSSDUP00000007813 rpl24 rpl24 rbm8a rbm8a LOC111230150 LOC111230150 LOC111219757 LOC111219757 rps21 rps21 pabpc1 pabpc1 rpl23 rpl23 rps8 rps8 NCBP1 NCBP1 smg5 smg5 rpl34 rpl34 LOC111238363 LOC111238363 rps26 rps26 rpl18 rpl18 RPL7A RPL7A rpl4 rpl4 rps7 rps7 rps2 rps2 RPL3L RPL3L rpl11 rpl11 GSPT1 GSPT1 rpl7l1 rpl7l1 rps9 rps9 LOC111235809 LOC111235809 rpsa rpsa ENSSDUP00000012814 ENSSDUP00000012814 ENSSDUP00000012997 ENSSDUP00000012997 Rps29 Rps29 UPF1 UPF1 rpl36 rpl36 LOC111226661 LOC111226661 upf3a upf3a LOC111226604 LOC111226604 ENSSDUP00000013579 ENSSDUP00000013579 LOC111240272 LOC111240272 ENSSDUP00000013916 ENSSDUP00000013916 LOC111240302 LOC111240302 rpl8 rpl8 pnrc2 pnrc2 rps24 rps24 LOC111227176 LOC111227176 rpl15 rpl15 rpl30 rpl30 RPL5 RPL5 LOC111238473 LOC111238473 smg9 smg9 LOC111223194 LOC111223194 rps18 rps18 rpl18a rpl18a rpl7 rpl7 rplp1 rplp1 pabpc4 pabpc4 rps28 rps28 rps15 rps15 rps12 rps12 LOC111228938 LOC111228938 rpl38 rpl38 rpl10 rpl10 rpl35 rpl35 rsad1 rsad1 arl6ip1 arl6ip1 LOC111217376 LOC111217376 RPS19 RPS19 rpl21 rpl21 rps4x rps4x LOC111231684 LOC111231684 rpl28 rpl28 ENSSDUP00000020807 ENSSDUP00000020807 rpl32 rpl32 ncbp2 ncbp2 rpl17 rpl17 dcp1a dcp1a rpl29 rpl29 kxd1 kxd1 mrnip mrnip smg6 smg6 ENSSDUP00000022981 ENSSDUP00000022981 ENSSDUP00000023177 ENSSDUP00000023177 casc3 casc3 LOC111236263 LOC111236263 rpl13a rpl13a UPF2 UPF2 LOC111233624 LOC111233624 smg7 smg7 rps11 rps11 rps16 rps16 smg1 smg1 LOC111223280 LOC111223280 rps10 rps10 rps5 rps5 rps3a rps3a rpl12 rpl12 ENSSDUP00000028342 ENSSDUP00000028342 rps23 rps23 rps15a rps15a pih1d3 pih1d3 LOC111228651 LOC111228651 LOC111219798 LOC111219798 ppp2r1b ppp2r1b rsrc1 rsrc1 RPS17 RPS17 eif4a3 eif4a3 LOC111217524 LOC111217524 rpl27 rpl27 LOC111219392 LOC111219392 rpl31 rpl31 LOC111236507 LOC111236507 RPL5-2 RPL5-2 rpl9 rpl9 RPL19 RPL19 rplp0 rplp0 etf1 etf1 rpl6 rpl6 rps14 rps14 rpl37 rpl37
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
magohMago homolog, exon junction complex subunit. (149 aa)
LOC111224111Uncharacterized protein. (154 aa)
rps13Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (201 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
rpl14Ribosomal protein L14. (136 aa)
RPL27ARibosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
rpl37aRibosomal protein L37a. (91 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (926 aa)
LOC111233766Uncharacterized protein. (130 aa)
rps27aRibosomal protein S27a. (156 aa)
rpl22l1Ribosomal protein L22-like 1. (129 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
rps3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
RPL36ARibosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
rnpepl1Arginyl aminopeptidase like 1. (717 aa)
rpl39Ribosomal protein L39. (76 aa)
RPS20Ribosomal protein S20. (119 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (461 aa)
rpl35aRibosomal protein L35a. (110 aa)
ENSSDUP0000000781340S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (92 aa)
rpl24Ribosomal protein L24. (157 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC11123015040S ribosomal protein S27. (89 aa)
LOC111219757RRM domain-containing protein. (300 aa)
rps2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
rpl23Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (213 aa)
NCBP1Nuclear cap binding protein subunit 1. (789 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1130 aa)
rpl34Ribosomal protein L34. (123 aa)
LOC111238363Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
rpl18Ribosomal protein L18. (156 aa)
RPL7ARibosomal protein L7a. (266 aa)
rpl4Ribosomal protein L4. (242 aa)
rps740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (205 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (297 aa)
RPL3LRibosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (200 aa)
GSPT1G1 to S phase transition 1. (585 aa)
rpl7l1Ribosomal protein L7-like 1. (247 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
LOC111235809Ribosomal protein S19. (187 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
ENSSDUP0000001281440S ribosomal protein S27. (89 aa)
ENSSDUP00000012997Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (102 aa)
Rps29Ribosomal protein S29. (89 aa)
UPF1UPF1 RNA helicase and ATPase. (1102 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
LOC111226661Ribosomal protein L26. (178 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (479 aa)
LOC111226604Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (420 aa)
ENSSDUP00000013579Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
LOC111240272Ribos_L4_asso_C domain-containing protein. (234 aa)
ENSSDUP0000001391640S ribosomal protein S27. (91 aa)
LOC111240302Ribosomal_L16 domain-containing protein. (119 aa)
rpl8Ribosomal protein L8. (257 aa)
pnrc2Proline-rich nuclear receptor coactivator 2. (156 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
LOC111227176RNA binding protein S1, serine-rich domain. (280 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
rpl30Ribosomal protein L30. (116 aa)
RPL5Ribosomal protein L5. (298 aa)
LOC111238473Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (508 aa)
LOC111223194Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
rpl7Ribosomal protein L7. (260 aa)
rplp1Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (129 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
rps28Ribosomal protein S28. (53 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (201 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (193 aa)
LOC111228938Uncharacterized protein. (1115 aa)
rpl38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
rpl10Ribosomal protein L10. (215 aa)
rpl35Ribosomal protein L35. (129 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (453 aa)
arl6ip1ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
LOC111217376Poly(A) binding protein, cytoplasmic 1-like. (656 aa)
RPS19Ribosomal protein S19. (152 aa)
rpl21Ribosomal protein L21. (160 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
LOC111231684Uncharacterized protein. (263 aa)
rpl28Ribosomal protein L28. (137 aa)
ENSSDUP00000020807Uncharacterized protein. (131 aa)
rpl32Ribosomal protein L32. (135 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
rpl17Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
dcp1aDecapping mRNA 1A. (495 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
kxd1KxDL motif containing 1. (184 aa)
mrnipUncharacterized protein. (321 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1661 aa)
ENSSDUP00000022981Uncharacterized protein. (1351 aa)
ENSSDUP00000023177Uncharacterized protein. (121 aa)
casc3Casc3 exon junction complex subunit. (785 aa)
LOC111236263G1 to S phase transition 1, like. (591 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1323 aa)
LOC111233624Ribosomal protein L22. (129 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1153 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (210 aa)
rps16Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3568 aa)
LOC11122328040S ribosomal protein S27. (84 aa)
rps10Ribosomal protein S10. (178 aa)
rps5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
ENSSDUP0000002834260S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
rps23Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
rps15aRibosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (164 aa)
pih1d3PIH1 domain containing 3. (194 aa)
LOC111228651Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
LOC111219798Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
ppp2r1bProtein phosphatase 2, regulatory subunit A, beta b. (636 aa)
rsrc1Arginine/serine-rich coiled-coil 1. (228 aa)
RPS17Ribosomal protein S17. (134 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
LOC111217524Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
LOC111219392Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rpl31Ribosomal protein L31. (124 aa)
LOC111236507NAD(P)-bd_dom domain-containing protein. (219 aa)
RPL5-2Ribosomal protein L5b. (371 aa)
rpl9Ribosomal protein L9. (241 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (210 aa)
rplp0Ribosomal protein, large, P0. (253 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
rpl6Ribosomal protein L6. (257 aa)
rps14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (118 aa)
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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