(44 nodes) Mixed, incl. Lipid oxidation, and Butanoate metabolism network (Planococcus donghaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU22232.1	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	ANU22233.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	ANU22234.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	ANU22235.1	TRAP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	ANU22236.1	Neu5Ac permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	ANU22237.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (182 aa)
	ANU22238.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	ANU22239.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ComB family. (248 aa)
	ANU22240.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	ANU22241.1	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	ANU22242.1	Phosphotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	ANU22243.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	ANU22244.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	ANU22245.1	2-deoxy-D-gluconate 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	ANU24783.1	ATP-dependent acyl-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	ANU22246.1	Beta-ketoadipyl CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	ANU24785.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ANU22247.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ANU22387.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	ANU22388.1	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)
	ANU22389.1	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	ANU22390.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	ANU22391.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	ANU24808.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (243 aa)
	ANU22960.1	hydroxymethylglutaryl-CoA lyase; Catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	ANU22961.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	ANU23509.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	ANU23633.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANU23634.1	Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	ANU23635.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	ANU23674.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	ANU23743.1	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	ANU23744.1	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	ANU23835.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)
	ANU23836.1	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	ANU23837.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	ANU23887.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	ANU23917.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ANU24106.1	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	ANU24122.1	butyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	ANU24365.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	ANU24366.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
	ANU24367.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (382 aa)
	ANU24420.1	Nitronate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)

Your Current Organism:

Planococcus donghaensis

NCBI taxonomy Id: 414778
Other names: DSM 22276, KCTC 13050, LMG 23779, LMG:23779, P. donghaensis, Planococcus donghaensis Choi et al. 2007, strain JH1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU22232.1	ANU22233.1	BCM40_02240	BCM40_02245	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
ANU22232.1	ANU22234.1	BCM40_02240	BCM40_02250	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
ANU22232.1	ANU22235.1	BCM40_02240	BCM40_02255	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
ANU22232.1	ANU22236.1	BCM40_02240	BCM40_02260	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Neu5Ac permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
ANU22232.1	ANU22237.1	BCM40_02240	BCM40_02265	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.484
ANU22232.1	ANU22238.1	BCM40_02240	BCM40_02270	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
ANU22232.1	ANU22240.1	BCM40_02240	BCM40_02280	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
ANU22232.1	ANU22241.1	BCM40_02240	BCM40_02285	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
ANU22232.1	ANU22247.1	BCM40_02240	BCM40_02330	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
ANU22232.1	ANU22390.1	BCM40_02240	BCM40_03070	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANU22232.1	ANU22391.1	BCM40_02240	BCM40_03075	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANU22232.1	ANU23509.1	BCM40_02240	BCM40_09040	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANU22232.1	ANU23835.1	BCM40_02240	BCM40_10860	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANU22232.1	ANU23837.1	BCM40_02240	BCM40_10870	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
ANU22232.1	ANU24365.1	BCM40_02240	BCM40_13865	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANU22233.1	ANU22232.1	BCM40_02245	BCM40_02240	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
ANU22233.1	ANU22234.1	BCM40_02245	BCM40_02250	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
ANU22233.1	ANU22235.1	BCM40_02245	BCM40_02255	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
ANU22233.1	ANU22236.1	BCM40_02245	BCM40_02260	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Neu5Ac permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
ANU22233.1	ANU22238.1	BCM40_02245	BCM40_02270	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515