STRINGSTRING
ABX22112.1 ABX22112.1 bioF bioF ABX21907.1 ABX21907.1 serC serC ABX21843.1 ABX21843.1 argD argD sufS sufS ABX21411.1 ABX21411.1 ABX21311.1 ABX21311.1 ABX21277.1 ABX21277.1 hisC hisC ABX20526.1 ABX20526.1 ABX20495.1 ABX20495.1 ABX20417.1 ABX20417.1 ABX20386.1 ABX20386.1 iscS iscS glyA glyA ABX20256.1 ABX20256.1 ABX20128.1 ABX20128.1 bioA bioA ABX24442.1 ABX24442.1 gcvP gcvP ABX24305.1 ABX24305.1 ABX24239.1 ABX24239.1 patA patA argD-2 argD-2 ABX23765.1 ABX23765.1 selA selA kbl kbl wecE wecE ABX23371.1 ABX23371.1 ABX23259.1 ABX23259.1 ABX23193.1 ABX23193.1 hemL hemL ABX22617.1 ABX22617.1 ABX22196.1 ABX22196.1 ABX22151.1 ABX22151.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABX22112.1Hypothetical protein; KEGG: stm:STM0701 0. speF; ornithine decarboxylase isozyme K01581; COG: COG1982 Arginine/lysine/ornithine decarboxylases; Psort location: Cytoplasmic, score:8.96. (732 aa)
bioFHypothetical protein; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (385 aa)
ABX21907.1Hypothetical protein; KEGG: spt:SPA1865 6.1e-164 ybjU; L-allo-threonine aldolase K01620; COG: COG2008 Threonine aldolase. (318 aa)
serCHypothetical protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (362 aa)
ABX21843.1Hypothetical protein; KEGG: stt:t1936 1.8e-205 aspC; aspartate aminotransferase K00813; COG: COG1448 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:9.26. (396 aa)
argDHypothetical protein; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (408 aa)
sufSHypothetical protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. (406 aa)
ABX21411.1Hypothetical protein; KEGG: ece:Z2627 1.9e-176 malY; enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase K01760; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities. (390 aa)
ABX21311.1Hypothetical protein; KEGG: spt:SPA1313 1.7e-216 putative aminotransferase K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities. (400 aa)
ABX21277.1Hypothetical protein; KEGG: eci:UTI89_C1658 4.8e-212 ydcR; hypothetical protein YdcR K00811; COG: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; Psort location: Cytoplasmic, score:9.26. (469 aa)
hisCHypothetical protein; KEGG: sec:SC2083 2.8e-182 hisC; histidinol phosphate aminotransferase K00817; COG: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Psort location: Cytoplasmic, score:8.96; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (359 aa)
ABX20526.1Hypothetical protein; KEGG: eci:UTI89_C2535 2.5e-87 yfbE; putative glutamine-scyllo-inositol transaminase K07806; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score:8.96; Belongs to the DegT/DnrJ/EryC1 family. (406 aa)
ABX20495.1Hypothetical protein; KEGG: sec:SC2332 1.0e-218 yfbQ; putative aminotransferase (ortho), paral putative regulator K00812; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:8.96. (404 aa)
ABX20417.1Hypothetical protein; KEGG: stm:STM2402 4.1e-222 yfdZ; putative aminotransferase; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:8.96. (412 aa)
ABX20386.1Hypothetical protein; KEGG: nwi:Nwi_0881 2.0e-25 transcriptional regulatory protein GntR family K00825; COG: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs. (430 aa)
iscSHypothetical protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. Also functions as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate; Belongs to the class-V pyridoxal-phosphate-dependent aminotransfer [...] (404 aa)
glyAHypothetical protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (419 aa)
ABX20256.1Hypothetical protein; KEGG: stt:t0297 0. cadA; lysine decarboxylase K01582; COG: COG1982 Arginine/lysine/ornithine decarboxylases. (714 aa)
ABX20128.1Hypothetical protein; KEGG: stm:STM2792 3.2e-222 gabT; 4-aminobutyrate aminotransferase K00823:K07250; COG: COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Psort location: Cytoplasmic, score:8.96; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)
bioAHypothetical protein; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (429 aa)
ABX24442.1Hypothetical protein; KEGG: stm:STM2984 1.8e-205 csdA; putative selenocysteine lyase; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score:8.96. (401 aa)
gcvPHypothetical protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (957 aa)
ABX24305.1Hypothetical protein; KEGG: stm:STM3114 0. speC; ornithine decarboxylase isozyme K01581; COG: COG1982 Arginine/lysine/ornithine decarboxylases. (711 aa)
ABX24239.1Hypothetical protein; KEGG: stt:t3081 1.2e-201 metC; beta-cystathionase K01760; COG: COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; Psort location: Cytoplasmic, score:9.26. (395 aa)
patAHypothetical protein; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. (429 aa)
argD-2Hypothetical protein; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (405 aa)
ABX23765.1Hypothetical protein; KEGG: stt:t3854 2.2e-223 avtA; valine--pyruvate aminotransferase K00835; COG: COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; Psort location: Cytoplasmic, score:8.96. (430 aa)
selAHypothetical protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family. (463 aa)
kblHypothetical protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (398 aa)
wecEHypothetical protein; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)
ABX23371.1Hypothetical protein; KEGG: ecc:c4892 4.7e-205 metB; cystathionine gamma-synthase K01739; COG: COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; Psort location: Cytoplasmic, score:9.97. (433 aa)
ABX23259.1Hypothetical protein; KEGG: sty:STY4444 6.2e-203 tyrB; aromatic-amino-acid aminotransferase K00832; COG: COG1448 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:9.26. (397 aa)
ABX23193.1Hypothetical protein; KEGG: sty:STY4495 0. adi; arginine decarboxylase K01584; COG: COG1982 Arginine/lysine/ornithine decarboxylases. (756 aa)
hemLHypothetical protein; KEGG: ecp:ECP_0164 6.4e-224 glutamate-1-semialdehyde 2,1-aminomutase K01845; COG: COG0001 Glutamate-1-semialdehyde aminotransferase; Psort location: Cytoplasmic, score:8.96. (426 aa)
ABX22617.1Hypothetical protein; KEGG: sec:SC0234 0. ldcC; lysine decarboxylase 2, constitutive K01582; COG: COG1982 Arginine/lysine/ornithine decarboxylases; Psort location: Cytoplasmic, score:8.96. (713 aa)
ABX22196.1Hypothetical protein; KEGG: stm:STM0603 4.3e-195 ybdL; putative aminotransferase K00812; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase. (386 aa)
ABX22151.1Hypothetical protein; KEGG: stt:t2223 1.9e-192 cobD; threonine-phosphate decarboxylase K04720; COG: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Psort location: Cytoplasmic, score:8.96. (364 aa)
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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