STRINGSTRING
patD patD ABX24276.1 ABX24276.1 ABX23763.1 ABX23763.1 ABX22896.1 ABX22896.1 proA proA ABX21783.1 ABX21783.1 ABX21761.1 ABX21761.1 astD astD ABX21357.1 ABX21357.1 ABX21106.1 ABX21106.1 ABX20755.1 ABX20755.1 ABX20357.1 ABX20357.1 ABX20129.1 ABX20129.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
patDHypothetical protein; Catalyzes the oxidation 4-aminobutanal (gamma- aminobutyraldehyde) to 4-aminobutanoate (gamma-aminobutyrate or GABA). This is the second step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate via 4- aminobutanal. Also functions as a 5-aminopentanal dehydrogenase in a a L-lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. (474 aa)
ABX24276.1Hypothetical protein; KEGG: stm:STM3129 1.2e-247 putative NAD-dependent aldehyde dehydrogenase K00146; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.26. (494 aa)
ABX23763.1Hypothetical protein; KEGG: spt:SPA3531 1.2e-277 aldB; aldehyde dehydrogenase B K00138; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.26. (522 aa)
ABX22896.1Hypothetical protein; KEGG: stm:STM4519 3.0e-233 putative NAD-dependent aldehyde dehydrogenase K00135; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.97. (456 aa)
proAHypothetical protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (416 aa)
ABX21783.1Hypothetical protein; KEGG: stm:STM1102 7.4e-262 hpaE; 4-hydroxyphenylacetate catabolism K00151; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.97. (488 aa)
ABX21761.1Hypothetical protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1320 aa)
astDHypothetical protein; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. (492 aa)
ABX21357.1Hypothetical protein; KEGG: spt:SPA1331 6.1e-235 yneI; putative aldehyde-dehydrogenase K08324; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.26. (462 aa)
ABX21106.1Hypothetical protein; KEGG: stm:STM1749 0. adhE; alcohol dehydrogenase / acetaldehyde dehydrogenase K00001:K04072; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.26; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (892 aa)
ABX20755.1Hypothetical protein; KEGG: rru:Rru_A0914 7.3e-113 aldehyde dehydrogenase K04021; COG: COG1012 NAD-dependent aldehyde dehydrogenases. (461 aa)
ABX20357.1Hypothetical protein; KEGG: rru:Rru_A0914 5.4e-101 aldehyde dehydrogenase K04021; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:8.96. (467 aa)
ABX20129.1Hypothetical protein; KEGG: stm:STM2791 9.0e-250 gabD; succinate-semialdehyde dehydrogenase I K00135; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score:9.97. (482 aa)
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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