STRINGSTRING
SHO72624.1 SHO72624.1 SHO74312.1 SHO74312.1 SHO74311.1 SHO74311.1 SHO74310.1 SHO74310.1 SHO74309.1 SHO74309.1 SHO74192.1 SHO74192.1 ppk ppk SHO73820.1 SHO73820.1 SHO73557.1 SHO73557.1 SHO73506.1 SHO73506.1 SHO73490.1 SHO73490.1 ctaA ctaA ppa ppa SHO72721.1 SHO72721.1 SHO72720.1 SHO72720.1 rbfA rbfA SHO72623.1 SHO72623.1 SHO72622.1 SHO72622.1 atpB atpB atpE atpE atpF atpF atpH atpH atpA atpA atpG atpG atpD atpD SHO72273.1 SHO72273.1 SHO72099.1 SHO72099.1 SHO72098.1 SHO72098.1 ctaB ctaB SHO72081.1 SHO72081.1 SHO72080.1 SHO72080.1 SHO72079.1 SHO72079.1 SHO72004.1 SHO72004.1 SHO71933.1 SHO71933.1 SHO71932.1 SHO71932.1 SHO71798.1 SHO71798.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SHO72624.1Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. (253 aa)
SHO74312.1Cytochrome c oxidase cbb3-type subunit 3. (313 aa)
SHO74311.1Hypothetical protein. (56 aa)
SHO74310.1Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. (723 aa)
SHO74309.1Cytochrome oxidase maturation protein, cbb3-type. (65 aa)
SHO74192.1Ca2+-transporting ATPase. (833 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (696 aa)
SHO73820.1Nitric oxide reductase NorE protein. (189 aa)
SHO73557.1NADH dehydrogenase. (434 aa)
SHO73506.14Fe-4S dicluster domain-containing protein. (116 aa)
SHO73490.1Uncharacterized membrane protein. (106 aa)
ctaACytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. (339 aa)
ppaInorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. (176 aa)
SHO72721.1Predicted Zn-dependent peptidase. (436 aa)
SHO72720.1Predicted Zn-dependent peptidase. (683 aa)
rbfARibosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (130 aa)
SHO72623.1Succinate dehydrogenase subunit A. (669 aa)
SHO72622.1Succinate dehydrogenase / fumarate reductase cytochrome b subunit. (289 aa)
atpBATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (385 aa)
atpEATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (64 aa)
atpFATP synthase F0 subcomplex B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (166 aa)
atpHATP synthase F1 subcomplex delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (177 aa)
atpAF-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (525 aa)
atpGATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (285 aa)
atpDATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (503 aa)
SHO72273.1F-type H+-transporting ATPase subunit epsilon. (93 aa)
SHO72099.1Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (383 aa)
SHO72098.1Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family. (588 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (300 aa)
SHO72081.1Cytochrome c oxidase subunit 3. (195 aa)
SHO72080.1Cytochrome c oxidase subunit 3. (326 aa)
SHO72079.1Cytochrome C oxidase subunit IV. (116 aa)
SHO72004.1Zinc protease; Belongs to the peptidase M16 family. (935 aa)
SHO71933.1Hypothetical protein; Belongs to the UPF0753 family. (831 aa)
SHO71932.1NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus. (622 aa)
SHO71798.1Polyphosphate:nucleotide phosphotransferase, PPK2 family. (291 aa)
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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