(78 nodes) Organellar ribosome, and Circadian rhythm - plant network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PQ58	Uncharacterized protein. (468 aa)
	A0A1V6PQA4	Uncharacterized protein. (193 aa)
	A0A1V6PQL4	Uncharacterized protein. (77 aa)
	A0A1V6PQZ7	Uncharacterized protein. (209 aa)
	A0A1V6PR21	RRF domain-containing protein. (263 aa)
	A0A1V6PRQ3	Uncharacterized protein. (106 aa)
	A0A1V6PRS0	Uncharacterized protein. (286 aa)
	A0A1V6PS43	Lactamase_B domain-containing protein. (292 aa)
	A0A1V6PS63	Lactamase_B domain-containing protein. (301 aa)
	A0A1V6PT79	Uncharacterized protein. (112 aa)
	A0A1V6PTA6	Uncharacterized protein. (378 aa)
	A0A1V6PW32	Ribosomal_L30 domain-containing protein. (118 aa)
	A0A1V6PWT6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	A0A1V6PWU5	Uncharacterized protein. (60 aa)
	A0A1V6PWV0	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (153 aa)
	A0A1V6PWW6	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (405 aa)
	A0A1V6PWY8	Uncharacterized protein. (227 aa)
	A0A1V6PXK9	Uncharacterized protein. (170 aa)
	A0A1V6PXL0	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (230 aa)
	A0A1V6PXT2	Mitoc_mL59 domain-containing protein. (207 aa)
	A0A1V6PY67	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (324 aa)
	A0A1V6PYC2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	A0A1V6PZ42	RNase III domain-containing protein. (403 aa)
	A0A1V6PZA8	Uncharacterized protein. (241 aa)
	A0A1V6PZI9	Uncharacterized protein. (238 aa)
	A0A1V6PZP2	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (211 aa)
	A0A1V6PZU8	L51_S25_CI-B8 domain-containing protein. (206 aa)
	A0A1V6Q216	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (95 aa)
	A0A1V6Q248	Uncharacterized protein. (244 aa)
	A0A1V6Q2E3	Uncharacterized protein. (254 aa)
	A0A1V6Q2K0	Uncharacterized protein. (346 aa)
	A0A1V6Q481	Uncharacterized protein. (1075 aa)
	A0A1V6Q4K9	Uncharacterized protein. (352 aa)
	A0A1V6Q4Q0	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (102 aa)
	A0A1V6Q536	Uncharacterized protein. (147 aa)
	A0A1V6Q5Z1	Uncharacterized protein. (124 aa)
	A0A1V6Q5Z8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (209 aa)
	A0A1V6Q7I3	Uncharacterized protein. (289 aa)
	A0A1V6Q7W9	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	A0A1V6Q897	37S ribosomal protein S25, mitochondrial. (307 aa)
	A0A1V6Q8E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (297 aa)
	A0A1V6Q8N8	RF_PROK_I domain-containing protein. (177 aa)
	A0A1V6Q8Y2	Uncharacterized protein. (143 aa)
	A0A1V6Q9C2	Ribosomal_L18e/L15P domain-containing protein. (316 aa)
	A0A1V6Q9D7	Uncharacterized protein. (117 aa)
	A0A1V6Q9H4	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (441 aa)
	A0A1V6Q9J6	Uncharacterized protein. (121 aa)
	A0A1V6QA84	Uncharacterized protein. (188 aa)
	A0A1V6QAK2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (307 aa)
	A0A1V6QB79	Ribosomal_S10 domain-containing protein. (289 aa)
	A0A1V6QBF1	Uncharacterized protein. (305 aa)
	A0A1V6QBU6	Uncharacterized protein. (200 aa)
	A0A1V6QC56	Uncharacterized protein. (417 aa)
	A0A1V6QC62	Uncharacterized protein. (498 aa)
	A0A1V6QCH6	L51_S25_CI-B8 domain-containing protein. (137 aa)
	A0A1V6QDI5	Sod_Fe_C domain-containing protein. (297 aa)
	A0A1V6QE84	Uncharacterized protein. (349 aa)
	A0A1V6QEB8	Uncharacterized protein. (193 aa)
	A0A1V6QEG5	Ribosomal_L2_C domain-containing protein. (467 aa)
	A0A1V6QEM5	Uncharacterized protein. (218 aa)
	A0A1V6QFZ6	Uncharacterized protein. (175 aa)
	A0A1V6QGB9	Uncharacterized protein. (297 aa)
	MEF2	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (922 aa)
	A0A1V6QGM6	Ribosomal_L5_C domain-containing protein. (355 aa)
	A0A1V6QGR8	Uncharacterized protein. (270 aa)
	A0A1V6QGV1	Nucleoside diphosphate kinase. (153 aa)
	A0A1V6QH57	Uncharacterized protein. (214 aa)
	A0A1V6QHB2	Uncharacterized protein. (490 aa)
	A0A1V6QIK5	Uncharacterized protein. (198 aa)
	A0A1V6QJN5	Uncharacterized protein. (172 aa)
	A0A1V6QKN7	Uncharacterized protein. (187 aa)
	A0A1V6QKW7	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (299 aa)
	A0A1V6QMM4	APH domain-containing protein. (270 aa)
	A0A1V6QNC4	MRP-S28 domain-containing protein. (384 aa)
	A0A1V6QNF0	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (131 aa)
	A0A1V6QP86	Uncharacterized protein. (178 aa)
	A0A1V6QPM7	MRP-L46 domain-containing protein. (337 aa)
	A0A1V6QQ58	Uncharacterized protein. (455 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6PQ58	A0A1V6PQL4	A0A1V6PQ58	A0A1V6PQL4	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A1V6PQ58	A0A1V6PR21	A0A1V6PQ58	A0A1V6PR21	Uncharacterized protein.	RRF domain-containing protein.	0.903
A0A1V6PQ58	A0A1V6PRS0	A0A1V6PQ58	A0A1V6PRS0	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A1V6PQ58	A0A1V6PS43	A0A1V6PQ58	A0A1V6PS43	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.744
A0A1V6PQ58	A0A1V6PS63	A0A1V6PQ58	A0A1V6PS63	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.744
A0A1V6PQ58	A0A1V6PT79	A0A1V6PQ58	A0A1V6PT79	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A1V6PQ58	A0A1V6PW32	A0A1V6PQ58	A0A1V6PW32	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.901
A0A1V6PQ58	A0A1V6PWT6	A0A1V6PQ58	A0A1V6PWT6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.962
A0A1V6PQ58	A0A1V6PWU5	A0A1V6PQ58	A0A1V6PWU5	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1V6PQ58	A0A1V6PWV0	A0A1V6PQ58	A0A1V6PWV0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.987
A0A1V6PQ58	A0A1V6PWW6	A0A1V6PQ58	A0A1V6PWW6	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.982
A0A1V6PQ58	A0A1V6PWY8	A0A1V6PQ58	A0A1V6PWY8	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A1V6PQ58	A0A1V6PXK9	A0A1V6PQ58	A0A1V6PXK9	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A1V6PQ58	A0A1V6PXL0	A0A1V6PQ58	A0A1V6PXL0	Uncharacterized protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.919
A0A1V6PQ58	A0A1V6PXT2	A0A1V6PQ58	A0A1V6PXT2	Uncharacterized protein.	Mitoc_mL59 domain-containing protein.	0.435
A0A1V6PQ58	A0A1V6PY67	A0A1V6PQ58	A0A1V6PY67	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.991
A0A1V6PQ58	A0A1V6PZ42	A0A1V6PQ58	A0A1V6PZ42	Uncharacterized protein.	RNase III domain-containing protein.	0.866
A0A1V6PQ58	A0A1V6PZA8	A0A1V6PQ58	A0A1V6PZA8	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A1V6PQ58	A0A1V6PZI9	A0A1V6PQ58	A0A1V6PZI9	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A1V6PQ58	A0A1V6PZP2	A0A1V6PQ58	A0A1V6PZP2	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.991