(19 nodes) Organellar large ribosomal subunit, and Ribosomal protein S17/S11 network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PT79	Uncharacterized protein. (112 aa)
	A0A1V6PWT6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	A0A1V6PWU5	Uncharacterized protein. (60 aa)
	A0A1V6PWV0	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (153 aa)
	A0A1V6PXK9	Uncharacterized protein. (170 aa)
	A0A1V6PY67	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (324 aa)
	A0A1V6PZI9	Uncharacterized protein. (238 aa)
	A0A1V6Q216	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (95 aa)
	A0A1V6Q5Z1	Uncharacterized protein. (124 aa)
	A0A1V6Q5Z8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (209 aa)
	A0A1V6Q7W9	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	A0A1V6Q8E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (297 aa)
	A0A1V6Q9C2	Ribosomal_L18e/L15P domain-containing protein. (316 aa)
	A0A1V6Q9H4	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (441 aa)
	A0A1V6QBF1	Uncharacterized protein. (305 aa)
	A0A1V6QEG5	Ribosomal_L2_C domain-containing protein. (467 aa)
	A0A1V6QEM5	Uncharacterized protein. (218 aa)
	A0A1V6QGM6	Ribosomal_L5_C domain-containing protein. (355 aa)
	A0A1V6QH57	Uncharacterized protein. (214 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PT79	A0A1V6PWT6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.994
A0A1V6PT79	A0A1V6PWU5	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PT79	A0A1V6PWV0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.998
A0A1V6PT79	A0A1V6PXK9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PT79	A0A1V6PY67	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
A0A1V6PT79	A0A1V6PZI9	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1V6PT79	A0A1V6Q216	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.998
A0A1V6PT79	A0A1V6Q5Z1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PT79	A0A1V6Q5Z8	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
A0A1V6PT79	A0A1V6Q7W9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.998
A0A1V6PT79	A0A1V6Q8E6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.998
A0A1V6PT79	A0A1V6Q9C2	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.996
A0A1V6PT79	A0A1V6Q9H4	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
A0A1V6PT79	A0A1V6QBF1	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1V6PT79	A0A1V6QEG5	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.998
A0A1V6PT79	A0A1V6QEM5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PT79	A0A1V6QGM6	Uncharacterized protein.	Ribosomal_L5_C domain-containing protein.	0.998
A0A1V6PT79	A0A1V6QH57	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PWT6	A0A1V6PT79	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.994
A0A1V6PWT6	A0A1V6PWU5	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.995