(5 nodes) Mixed, incl. Ribosomal protein L6, and Ribosomal protein L3 network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PWT6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	A0A1V6PXK9	Uncharacterized protein. (170 aa)
	A0A1V6PY67	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (324 aa)
	A0A1V6Q8E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (297 aa)
	A0A1V6QEG5	Ribosomal_L2_C domain-containing protein. (467 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PWT6	A0A1V6PXK9	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.998
A0A1V6PWT6	A0A1V6PY67	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A1V6PWT6	A0A1V6Q8E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1V6PWT6	A0A1V6QEG5	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal_L2_C domain-containing protein.	0.998
A0A1V6PXK9	A0A1V6PWT6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.998
A0A1V6PXK9	A0A1V6PY67	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A1V6PXK9	A0A1V6Q8E6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1V6PXK9	A0A1V6QEG5	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.998
A0A1V6PY67	A0A1V6PWT6	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.999
A0A1V6PY67	A0A1V6PXK9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.999
A0A1V6PY67	A0A1V6Q8E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1V6PY67	A0A1V6QEG5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L2_C domain-containing protein.	0.999
A0A1V6Q8E6	A0A1V6PWT6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.999
A0A1V6Q8E6	A0A1V6PXK9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.999
A0A1V6Q8E6	A0A1V6PY67	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A1V6Q8E6	A0A1V6QEG5	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L2_C domain-containing protein.	0.998
A0A1V6QEG5	A0A1V6PWT6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.998
A0A1V6QEG5	A0A1V6PXK9	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.998
A0A1V6QEG5	A0A1V6PY67	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A1V6QEG5	A0A1V6Q8E6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.998