43 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PQ20	Sialidase domain-containing protein. (364 aa)
	A0A1V6PR78	Uncharacterized protein. (908 aa)
	A0A1V6PRZ0	DRIM domain-containing protein. (2607 aa)
	A0A1V6PS18	Uncharacterized protein. (713 aa)
	A0A1V6PSD7	WD_REPEATS_REGION domain-containing protein. (957 aa)
	A0A1V6PSL8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (364 aa)
	A0A1V6PU09	PINc domain-containing protein. (192 aa)
	A0A1V6PU74	WD_REPEATS_REGION domain-containing protein. (1027 aa)
	A0A1V6PVB1	Uncharacterized protein. (259 aa)
	A0A1V6PVG6	WD_REPEATS_REGION domain-containing protein. (531 aa)
	A0A1V6PXV8	Uncharacterized protein. (509 aa)
	A0A1V6PYM7	Brix domain-containing protein. (291 aa)
	A0A1V6PZ05	Uncharacterized protein. (713 aa)
	A0A1V6PZ79	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	A0A1V6PZW5	WD_REPEATS_REGION domain-containing protein. (543 aa)
	A0A1V6PZX2	BP28CT domain-containing protein. (1804 aa)
	A0A1V6Q1H3	Uncharacterized protein. (306 aa)
	A0A1V6Q1N4	WD_REPEATS_REGION domain-containing protein. (891 aa)
	A0A1V6Q219	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	A0A1V6Q259	Bms1-type G domain-containing protein. (1192 aa)
	A0A1V6Q2G8	NUC153 domain-containing protein. (722 aa)
	A0A1V6Q2J0	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	A0A1V6Q3Y9	Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
	A0A1V6Q673	Uncharacterized protein. (947 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1038 aa)
	A0A1V6Q7W0	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (699 aa)
	A0A1V6Q8L2	WD_REPEATS_REGION domain-containing protein. (613 aa)
	A0A1V6Q8Q1	Nop domain-containing protein. (512 aa)
	A0A1V6Q905	WD_REPEATS_REGION domain-containing protein. (971 aa)
	A0A1V6QA08	Uncharacterized protein. (393 aa)
	A0A1V6QB27	Fcf2 domain-containing protein. (217 aa)
	A0A1V6QD92	WD_REPEATS_REGION domain-containing protein. (946 aa)
	A0A1V6QE61	Uncharacterized protein. (616 aa)
	A0A1V6QFB1	Utp12 domain-containing protein. (828 aa)
	A0A1V6QFS0	WD_REPEATS_REGION domain-containing protein. (898 aa)
	A0A1V6QI13	U3 small nucleolar RNA-associated protein 22. (1086 aa)
	A0A1V6QII4	CBF domain-containing protein. (546 aa)
	A0A1V6QJ93	Uncharacterized protein. (403 aa)
	A0A1V6QL22	Sas10 domain-containing protein. (631 aa)
	A0A1V6QLA5	Uncharacterized protein; Belongs to the DEAD box helicase family. (523 aa)
	A0A1V6QLD6	Nop domain-containing protein. (575 aa)
	A0A1V6QNE1	S4 RNA-binding domain-containing protein. (188 aa)
	A0A1V6QNV5	Uncharacterized protein. (1803 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6PQ20	A0A1V6PR78	A0A1V6PQ20	A0A1V6PR78	Sialidase domain-containing protein.	Uncharacterized protein.	0.939
A0A1V6PQ20	A0A1V6PRZ0	A0A1V6PQ20	A0A1V6PRZ0	Sialidase domain-containing protein.	DRIM domain-containing protein.	0.932
A0A1V6PQ20	A0A1V6PS18	A0A1V6PQ20	A0A1V6PS18	Sialidase domain-containing protein.	Uncharacterized protein.	0.958
A0A1V6PQ20	A0A1V6PSD7	A0A1V6PQ20	A0A1V6PSD7	Sialidase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.935
A0A1V6PQ20	A0A1V6PSL8	A0A1V6PQ20	A0A1V6PSL8	Sialidase domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.959
A0A1V6PQ20	A0A1V6PU09	A0A1V6PQ20	A0A1V6PU09	Sialidase domain-containing protein.	PINc domain-containing protein.	0.947
A0A1V6PQ20	A0A1V6PU74	A0A1V6PQ20	A0A1V6PU74	Sialidase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.963
A0A1V6PQ20	A0A1V6PVB1	A0A1V6PQ20	A0A1V6PVB1	Sialidase domain-containing protein.	Uncharacterized protein.	0.955
A0A1V6PQ20	A0A1V6PVG6	A0A1V6PQ20	A0A1V6PVG6	Sialidase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.961
A0A1V6PQ20	A0A1V6PXV8	A0A1V6PQ20	A0A1V6PXV8	Sialidase domain-containing protein.	Uncharacterized protein.	0.981
A0A1V6PQ20	A0A1V6PYM7	A0A1V6PQ20	A0A1V6PYM7	Sialidase domain-containing protein.	Brix domain-containing protein.	0.977
A0A1V6PQ20	A0A1V6PZ05	A0A1V6PQ20	A0A1V6PZ05	Sialidase domain-containing protein.	Uncharacterized protein.	0.568
A0A1V6PQ20	A0A1V6PZ79	A0A1V6PQ20	A0A1V6PZ79	Sialidase domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.968
A0A1V6PQ20	A0A1V6PZW5	A0A1V6PQ20	A0A1V6PZW5	Sialidase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.957
A0A1V6PQ20	A0A1V6PZX2	A0A1V6PQ20	A0A1V6PZX2	Sialidase domain-containing protein.	BP28CT domain-containing protein.	0.972
A0A1V6PQ20	A0A1V6Q1H3	A0A1V6PQ20	A0A1V6Q1H3	Sialidase domain-containing protein.	Uncharacterized protein.	0.928
A0A1V6PQ20	A0A1V6Q1N4	A0A1V6PQ20	A0A1V6Q1N4	Sialidase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.952
A0A1V6PQ20	A0A1V6Q219	A0A1V6PQ20	A0A1V6Q219	Sialidase domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.971
A0A1V6PQ20	A0A1V6Q259	A0A1V6PQ20	A0A1V6Q259	Sialidase domain-containing protein.	Bms1-type G domain-containing protein.	0.956
A0A1V6PQ20	A0A1V6Q2G8	A0A1V6PQ20	A0A1V6Q2G8	Sialidase domain-containing protein.	NUC153 domain-containing protein.	0.951