(24 nodes) tRNA Aminoacylation network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PTG7	Lysine--tRNA ligase. (593 aa)
	A0A1V6PUD1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1077 aa)
	A0A1V6PWK4	Uncharacterized protein. (516 aa)
	A0A1V6PZY6	Uncharacterized protein. (1125 aa)
	A0A1V6Q0F2	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (547 aa)
	A0A1V6Q0L0	Tyrosine--tRNA ligase. (1532 aa)
	A0A1V6Q1A8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (998 aa)
	A0A1V6Q1N0	Uncharacterized protein. (1212 aa)
	A0A1V6Q2K9	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (646 aa)
	A0A1V6Q2W9	Lysine--tRNA ligase. (605 aa)
	A0A1V6Q3W6	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (648 aa)
	A0A1V6Q5W3	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (645 aa)
	A0A1V6Q6B4	AA_TRNA_LIGASE_II domain-containing protein. (536 aa)
	A0A1V6QAA6	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (977 aa)
	A0A1V6QDD3	AA_TRNA_LIGASE_II domain-containing protein. (540 aa)
	A0A1V6QDK2	B5 domain-containing protein. (600 aa)
	A0A1V6QGI5	Tyrosine--tRNA ligase. (389 aa)
	A0A1V6QGW1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (711 aa)
	A0A1V6QHF2	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1067 aa)
	A0A1V6QHW3	DUF2156 domain-containing protein. (555 aa)
	A0A1V6QKJ8	AA_TRNA_LIGASE_II domain-containing protein. (629 aa)
	A0A1V6QMK0	AA_TRNA_LIGASE_II domain-containing protein. (597 aa)
	A0A1V6QNI9	tRNA-binding domain-containing protein. (450 aa)
	A0A1V6QQE2	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (592 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PTG7	A0A1V6PUD1	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.931
A0A1V6PTG7	A0A1V6PWK4	Lysine--tRNA ligase.	Uncharacterized protein.	0.558
A0A1V6PTG7	A0A1V6PZY6	Lysine--tRNA ligase.	Uncharacterized protein.	0.884
A0A1V6PTG7	A0A1V6Q0F2	Lysine--tRNA ligase.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.775
A0A1V6PTG7	A0A1V6Q0L0	Lysine--tRNA ligase.	Tyrosine--tRNA ligase.	0.520
A0A1V6PTG7	A0A1V6Q1A8	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.795
A0A1V6PTG7	A0A1V6Q1N0	Lysine--tRNA ligase.	Uncharacterized protein.	0.795
A0A1V6PTG7	A0A1V6Q2K9	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.891
A0A1V6PTG7	A0A1V6Q3W6	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.916
A0A1V6PTG7	A0A1V6Q5W3	Lysine--tRNA ligase.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.860
A0A1V6PTG7	A0A1V6Q6B4	Lysine--tRNA ligase.	AA_TRNA_LIGASE_II domain-containing protein.	0.875
A0A1V6PTG7	A0A1V6QAA6	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.810
A0A1V6PTG7	A0A1V6QDD3	Lysine--tRNA ligase.	AA_TRNA_LIGASE_II domain-containing protein.	0.545
A0A1V6PTG7	A0A1V6QDK2	Lysine--tRNA ligase.	B5 domain-containing protein.	0.699
A0A1V6PTG7	A0A1V6QGI5	Lysine--tRNA ligase.	Tyrosine--tRNA ligase.	0.582
A0A1V6PTG7	A0A1V6QGW1	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.901
A0A1V6PTG7	A0A1V6QHF2	Lysine--tRNA ligase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.641
A0A1V6PTG7	A0A1V6QHW3	Lysine--tRNA ligase.	DUF2156 domain-containing protein.	0.716
A0A1V6PTG7	A0A1V6QKJ8	Lysine--tRNA ligase.	AA_TRNA_LIGASE_II domain-containing protein.	0.840
A0A1V6PTG7	A0A1V6QMK0	Lysine--tRNA ligase.	AA_TRNA_LIGASE_II domain-containing protein.	0.894