10 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PUE6	Peptidase C50 domain-containing protein. (2064 aa)
	A0A1V6PVD1	Uncharacterized protein. (290 aa)
	A0A1V6PW19	Structural maintenance of chromosomes protein. (1257 aa)
	A0A1V6Q1L9	Structural maintenance of chromosomes protein. (1199 aa)
	A0A1V6Q3D9	Rad21_Rec8_N domain-containing protein. (690 aa)
	A0A1V6Q6K2	Sister chromatid cohesion protein. (1773 aa)
	A0A1V6QEZ2	Uncharacterized protein. (584 aa)
	A0A1V6QG38	UmuC domain-containing protein. (644 aa)
	A0A1V6QP20	SCD domain-containing protein. (1185 aa)
	A0A1V6QPU1	Uncharacterized protein. (1498 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PUE6	A0A1V6PVD1	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.859
A0A1V6PUE6	A0A1V6PW19	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.957
A0A1V6PUE6	A0A1V6Q1L9	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.959
A0A1V6PUE6	A0A1V6Q3D9	Peptidase C50 domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.972
A0A1V6PUE6	A0A1V6Q6K2	Peptidase C50 domain-containing protein.	Sister chromatid cohesion protein.	0.667
A0A1V6PUE6	A0A1V6QEZ2	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.979
A0A1V6PUE6	A0A1V6QG38	Peptidase C50 domain-containing protein.	UmuC domain-containing protein.	0.700
A0A1V6PUE6	A0A1V6QP20	Peptidase C50 domain-containing protein.	SCD domain-containing protein.	0.949
A0A1V6PUE6	A0A1V6QPU1	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.815
A0A1V6PVD1	A0A1V6PUE6	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.859
A0A1V6PVD1	A0A1V6Q1L9	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.987
A0A1V6PVD1	A0A1V6Q3D9	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.951
A0A1V6PVD1	A0A1V6Q6K2	Uncharacterized protein.	Sister chromatid cohesion protein.	0.979
A0A1V6PVD1	A0A1V6QEZ2	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A1V6PVD1	A0A1V6QG38	Uncharacterized protein.	UmuC domain-containing protein.	0.956
A0A1V6PVD1	A0A1V6QP20	Uncharacterized protein.	SCD domain-containing protein.	0.989
A0A1V6PVD1	A0A1V6QPU1	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1V6PW19	A0A1V6PUE6	Structural maintenance of chromosomes protein.	Peptidase C50 domain-containing protein.	0.957
A0A1V6PW19	A0A1V6Q1L9	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.995
A0A1V6PW19	A0A1V6Q3D9	Structural maintenance of chromosomes protein.	Rad21_Rec8_N domain-containing protein.	0.989