(22 nodes) RAB geranylgeranylation, and Rab-GAP-TBC domain network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PPU8	Rab-GAP TBC domain-containing protein. (887 aa)
	A0A1V6PRQ9	Uncharacterized protein. (211 aa)
	A0A1V6PSJ2	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (517 aa)
	A0A1V6PU00	Uncharacterized protein. (199 aa)
	A0A1V6PWM9	Uncharacterized protein. (205 aa)
	A0A1V6PXI6	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (467 aa)
	A0A1V6PYK3	VPS9 domain-containing protein. (715 aa)
	A0A1V6Q0C3	Uncharacterized protein. (217 aa)
	A0A1V6Q2Q5	Uncharacterized protein. (335 aa)
	A0A1V6Q6J3	Rab-GAP TBC domain-containing protein. (233 aa)
	A0A1V6Q721	Uncharacterized protein. (208 aa)
	A0A1V6Q8R3	Rab-GAP TBC domain-containing protein. (843 aa)
	A0A1V6QA15	Rab-GAP TBC domain-containing protein. (796 aa)
	A0A1V6QBH3	Uncharacterized protein. (565 aa)
	A0A1V6QCF2	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (319 aa)
	A0A1V6QEA3	Uncharacterized protein. (355 aa)
	A0A1V6QER7	Rab-GAP TBC domain-containing protein. (903 aa)
	A0A1V6QES7	Uncharacterized protein. (759 aa)
	A0A1V6QFF8	Rab-GAP TBC domain-containing protein. (591 aa)
	A0A1V6QII7	Uncharacterized protein. (1555 aa)
	A0A1V6QIS8	Uncharacterized protein. (192 aa)
	A0A1V6QKT2	Uncharacterized protein. (261 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PPU8	A0A1V6PRQ9	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.693
A0A1V6PPU8	A0A1V6PYK3	Rab-GAP TBC domain-containing protein.	VPS9 domain-containing protein.	0.433
A0A1V6PPU8	A0A1V6Q0C3	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.505
A0A1V6PPU8	A0A1V6Q721	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.736
A0A1V6PPU8	A0A1V6QES7	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.433
A0A1V6PPU8	A0A1V6QII7	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.689
A0A1V6PPU8	A0A1V6QIS8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.433
A0A1V6PPU8	A0A1V6QKT2	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.505
A0A1V6PRQ9	A0A1V6PPU8	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.693
A0A1V6PRQ9	A0A1V6PSJ2	Uncharacterized protein.	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	0.933
A0A1V6PRQ9	A0A1V6PU00	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A1V6PRQ9	A0A1V6PWM9	Uncharacterized protein.	Uncharacterized protein.	0.843
A0A1V6PRQ9	A0A1V6PXI6	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.995
A0A1V6PRQ9	A0A1V6PYK3	Uncharacterized protein.	VPS9 domain-containing protein.	0.473
A0A1V6PRQ9	A0A1V6Q0C3	Uncharacterized protein.	Uncharacterized protein.	0.599
A0A1V6PRQ9	A0A1V6Q2Q5	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A1V6PRQ9	A0A1V6Q6J3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.996
A0A1V6PRQ9	A0A1V6Q721	Uncharacterized protein.	Uncharacterized protein.	0.897
A0A1V6PRQ9	A0A1V6Q8R3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.689
A0A1V6PRQ9	A0A1V6QA15	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.709