12 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PM10	Uncharacterized protein. (343 aa)
	A0A1V6Q3H8	Uncharacterized protein. (883 aa)
	A0A1V6Q9W1	Uncharacterized protein. (213 aa)
	A0A1V6QAR6	Uncharacterized protein. (171 aa)
	A0A1V6QF70	Uncharacterized protein. (363 aa)
	A0A1V6QHZ2	Uncharacterized protein. (267 aa)
	A0A1V6QIQ1	Uncharacterized protein. (307 aa)
	A0A1V6QNQ9	Uncharacterized protein. (96 aa)
	A0A1V6QNU3	Uncharacterized protein. (212 aa)
	A0A1V6PGU4	Uncharacterized protein. (229 aa)
	A0A1V6PI11	Uncharacterized protein. (282 aa)
	A0A1V6PWQ9	Ribonuclease P protein subunit. (242 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PGU4	A0A1V6PWQ9	Uncharacterized protein.	Ribonuclease P protein subunit.	0.935
A0A1V6PGU4	A0A1V6Q3H8	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A1V6PGU4	A0A1V6QAR6	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A1V6PGU4	A0A1V6QIQ1	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A1V6PGU4	A0A1V6QNQ9	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A1V6PGU4	A0A1V6QNU3	Uncharacterized protein.	Uncharacterized protein.	0.934
A0A1V6PI11	A0A1V6PWQ9	Uncharacterized protein.	Ribonuclease P protein subunit.	0.918
A0A1V6PI11	A0A1V6Q3H8	Uncharacterized protein.	Uncharacterized protein.	0.886
A0A1V6PI11	A0A1V6QIQ1	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A1V6PI11	A0A1V6QNU3	Uncharacterized protein.	Uncharacterized protein.	0.923
A0A1V6PM10	A0A1V6PWQ9	Uncharacterized protein.	Ribonuclease P protein subunit.	0.918
A0A1V6PM10	A0A1V6Q3H8	Uncharacterized protein.	Uncharacterized protein.	0.886
A0A1V6PM10	A0A1V6QIQ1	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A1V6PM10	A0A1V6QNU3	Uncharacterized protein.	Uncharacterized protein.	0.923
A0A1V6PWQ9	A0A1V6PGU4	Ribonuclease P protein subunit.	Uncharacterized protein.	0.935
A0A1V6PWQ9	A0A1V6PI11	Ribonuclease P protein subunit.	Uncharacterized protein.	0.918
A0A1V6PWQ9	A0A1V6PM10	Ribonuclease P protein subunit.	Uncharacterized protein.	0.918
A0A1V6PWQ9	A0A1V6Q3H8	Ribonuclease P protein subunit.	Uncharacterized protein.	0.999
A0A1V6PWQ9	A0A1V6Q9W1	Ribonuclease P protein subunit.	Uncharacterized protein.	0.998
A0A1V6PWQ9	A0A1V6QAR6	Ribonuclease P protein subunit.	Uncharacterized protein.	0.998