5 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PTZ1	Uncharacterized protein. (411 aa)
	A0A1V6PUL9	Uncharacterized protein. (581 aa)
	A0A1V6PXB3	Pyruvate carboxyltransferase domain-containing protein. (358 aa)
	A0A1V6Q3G2	Uncharacterized protein. (397 aa)
	A0A1V6Q3U0	Uncharacterized protein. (311 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PTZ1	A0A1V6PUL9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A1V6PTZ1	A0A1V6Q3G2	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A1V6PTZ1	A0A1V6Q3U0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A1V6PUL9	A0A1V6PTZ1	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A1V6PUL9	A0A1V6PXB3	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.879
A0A1V6PUL9	A0A1V6Q3G2	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A1V6PUL9	A0A1V6Q3U0	Uncharacterized protein.	Uncharacterized protein.	0.787
A0A1V6PXB3	A0A1V6PUL9	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.879
A0A1V6Q3G2	A0A1V6PTZ1	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A1V6Q3G2	A0A1V6PUL9	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A1V6Q3U0	A0A1V6PTZ1	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A1V6Q3U0	A0A1V6PUL9	Uncharacterized protein.	Uncharacterized protein.	0.787