20 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PYH9	Uncharacterized protein. (437 aa)
	A0A1V6PYE8	Spindle pole body component. (952 aa)
	A0A1V6PX25	Uncharacterized protein. (162 aa)
	A0A1V6PVP2	Uncharacterized protein. (678 aa)
	A0A1V6PTX6	Csm1 domain-containing protein. (527 aa)
	A0A1V6PR59	Uncharacterized protein. (1079 aa)
	A0A1V6Q3J7	Uncharacterized protein. (289 aa)
	A0A1V6QLQ0	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (807 aa)
	A0A1V6Q528	Uncharacterized protein. (417 aa)
	A0A1V6Q6G4	Uncharacterized protein. (138 aa)
	A0A1V6QA78	Uncharacterized protein. (173 aa)
	A0A1V6QA95	Uncharacterized protein. (748 aa)
	A0A1V6QCX9	Spc7 domain-containing protein. (1481 aa)
	A0A1V6QGQ7	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (754 aa)
	A0A1V6QI65	Serine/threonine-protein kinase. (1142 aa)
	A0A1V6QKE4	Uncharacterized protein. (521 aa)
	A0A1V6PZ70	Uncharacterized protein. (323 aa)
	A0A1V6PZT6	Uncharacterized protein. (210 aa)
	A0A1V6Q2R8	Protein kinase domain-containing protein. (825 aa)
	A0A1V6Q3D9	Rad21_Rec8_N domain-containing protein. (690 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PR59	A0A1V6QI65	Uncharacterized protein.	Serine/threonine-protein kinase.	0.432
A0A1V6PTX6	A0A1V6PVP2	Csm1 domain-containing protein.	Uncharacterized protein.	0.496
A0A1V6PTX6	A0A1V6QKE4	Csm1 domain-containing protein.	Uncharacterized protein.	0.934
A0A1V6PVP2	A0A1V6PTX6	Uncharacterized protein.	Csm1 domain-containing protein.	0.496
A0A1V6PVP2	A0A1V6QA95	Uncharacterized protein.	Uncharacterized protein.	0.559
A0A1V6PVP2	A0A1V6QCX9	Uncharacterized protein.	Spc7 domain-containing protein.	0.447
A0A1V6PX25	A0A1V6PYE8	Uncharacterized protein.	Spindle pole body component.	0.852
A0A1V6PX25	A0A1V6PYH9	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A1V6PX25	A0A1V6PZT6	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A1V6PX25	A0A1V6Q6G4	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A1V6PX25	A0A1V6QA78	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A1V6PX25	A0A1V6QKE4	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A1V6PYE8	A0A1V6PX25	Spindle pole body component.	Uncharacterized protein.	0.852
A0A1V6PYE8	A0A1V6PZT6	Spindle pole body component.	Uncharacterized protein.	0.854
A0A1V6PYE8	A0A1V6Q6G4	Spindle pole body component.	Uncharacterized protein.	0.961
A0A1V6PYE8	A0A1V6QA78	Spindle pole body component.	Uncharacterized protein.	0.850
A0A1V6PYE8	A0A1V6QA95	Spindle pole body component.	Uncharacterized protein.	0.704
A0A1V6PYE8	A0A1V6QCX9	Spindle pole body component.	Spc7 domain-containing protein.	0.431
A0A1V6PYE8	A0A1V6QKE4	Spindle pole body component.	Uncharacterized protein.	0.797
A0A1V6PYH9	A0A1V6PX25	Uncharacterized protein.	Uncharacterized protein.	0.951