19 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QNA6	PseudoU_synth_1 domain-containing protein. (567 aa)
	A0A1V6QJU2	Uncharacterized protein. (237 aa)
	A0A1V6QGQ6	Uncharacterized protein; Belongs to the terpene cyclase/mutase family. (1252 aa)
	A0A1V6QCZ5	Uncharacterized protein; Belongs to the phosphohexose mutase family. (554 aa)
	A0A1V6QBP4	Chorismate mutase. (266 aa)
	A0A1V6QA28	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (478 aa)
	A0A1V6Q9K9	Uncharacterized protein. (519 aa)
	A0A1V6Q7J1	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family. (664 aa)
	A0A1V6Q4D4	Uncharacterized protein. (188 aa)
	A0A1V6Q402	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions. (268 aa)
	A0A1V6Q3Z5	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family. (539 aa)
	A0A1V6Q3H3	Uncharacterized protein. (1019 aa)
	A0A1V6PZE7	TRUD domain-containing protein. (740 aa)
	A0A1V6PXG2	CMP/dCMP-type deaminase domain-containing protein. (226 aa)
	A0A1V6PX48	Uncharacterized protein. (400 aa)
	A0A1V6PUW1	PUA domain-containing protein. (472 aa)
	A0A1V6PU48	Uncharacterized protein. (204 aa)
	A0A1V6QPE1	S4 RNA-binding domain-containing protein. (526 aa)
	A0A1V6QK03	PseudoU_synth_1 domain-containing protein. (610 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PU48	A0A1V6PXG2	Uncharacterized protein.	CMP/dCMP-type deaminase domain-containing protein.	0.508
A0A1V6PUW1	A0A1V6PX48	PUA domain-containing protein.	Uncharacterized protein.	0.406
A0A1V6PUW1	A0A1V6PXG2	PUA domain-containing protein.	CMP/dCMP-type deaminase domain-containing protein.	0.611
A0A1V6PUW1	A0A1V6PZE7	PUA domain-containing protein.	TRUD domain-containing protein.	0.674
A0A1V6PUW1	A0A1V6Q4D4	PUA domain-containing protein.	Uncharacterized protein.	0.828
A0A1V6PUW1	A0A1V6QK03	PUA domain-containing protein.	PseudoU_synth_1 domain-containing protein.	0.828
A0A1V6PUW1	A0A1V6QNA6	PUA domain-containing protein.	PseudoU_synth_1 domain-containing protein.	0.907
A0A1V6PUW1	A0A1V6QPE1	PUA domain-containing protein.	S4 RNA-binding domain-containing protein.	0.411
A0A1V6PX48	A0A1V6PUW1	Uncharacterized protein.	PUA domain-containing protein.	0.406
A0A1V6PX48	A0A1V6PXG2	Uncharacterized protein.	CMP/dCMP-type deaminase domain-containing protein.	0.611
A0A1V6PX48	A0A1V6PZE7	Uncharacterized protein.	TRUD domain-containing protein.	0.634
A0A1V6PX48	A0A1V6Q4D4	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A1V6PX48	A0A1V6QK03	Uncharacterized protein.	PseudoU_synth_1 domain-containing protein.	0.851
A0A1V6PX48	A0A1V6QNA6	Uncharacterized protein.	PseudoU_synth_1 domain-containing protein.	0.897
A0A1V6PX48	A0A1V6QPE1	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.603
A0A1V6PXG2	A0A1V6PU48	CMP/dCMP-type deaminase domain-containing protein.	Uncharacterized protein.	0.508
A0A1V6PXG2	A0A1V6PUW1	CMP/dCMP-type deaminase domain-containing protein.	PUA domain-containing protein.	0.611
A0A1V6PXG2	A0A1V6PX48	CMP/dCMP-type deaminase domain-containing protein.	Uncharacterized protein.	0.611
A0A1V6PXG2	A0A1V6PZE7	CMP/dCMP-type deaminase domain-containing protein.	TRUD domain-containing protein.	0.872
A0A1V6PXG2	A0A1V6Q402	CMP/dCMP-type deaminase domain-containing protein.	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	0.481