16 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QI72	Exonuclease domain-containing protein. (706 aa)
	A0A1V6QAC8	HRDC domain-containing protein. (754 aa)
	A0A1V6QDE6	Exonuclease domain-containing protein. (187 aa)
	A0A1V6QE72	Uncharacterized protein; Belongs to the RNR ribonuclease family. (1032 aa)
	A0A1V6QG94	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1395 aa)
	A0A1V6QGS5	Uncharacterized protein. (480 aa)
	A0A1V6QI39	POLIIIAc domain-containing protein. (486 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (294 aa)
	A0A1V6QJP7	RNB domain-containing protein. (1360 aa)
	A0A1V6QNG1	Uncharacterized protein. (539 aa)
	A0A1V6Q1R4	RNB domain-containing protein. (1086 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1168 aa)
	A0A1V6Q6Y9	3'-5' exonuclease domain-containing protein. (1321 aa)
	A0A1V6PTP0	CCHC-type domain-containing protein. (1209 aa)
	A0A1V6QMP0	Endo/exonuclease/phosphatase domain-containing protein. (288 aa)
	A0A1V6QML4	Endo/exonuclease/phosphatase domain-containing protein. (748 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6PTP0	A0A1V6QAC8	A0A1V6PTP0	A0A1V6QAC8	CCHC-type domain-containing protein.	HRDC domain-containing protein.	0.577
A0A1V6PTP0	A0A1V6QE72	A0A1V6PTP0	A0A1V6QE72	CCHC-type domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.497
A0A1V6PTP0	A0A1V6QG94	A0A1V6PTP0	A0A1V6QG94	CCHC-type domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.980
A0A1V6PTP0	A0A1V6QJP7	A0A1V6PTP0	A0A1V6QJP7	CCHC-type domain-containing protein.	RNB domain-containing protein.	0.420
A0A1V6Q1R4	A0A1V6QAC8	A0A1V6Q1R4	A0A1V6QAC8	RNB domain-containing protein.	HRDC domain-containing protein.	0.590
A0A1V6Q1R4	A0A1V6QG94	A0A1V6Q1R4	A0A1V6QG94	RNB domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.828
A0A1V6Q1R4	A0A1V6QI72	A0A1V6Q1R4	A0A1V6QI72	RNB domain-containing protein.	Exonuclease domain-containing protein.	0.621
A0A1V6Q1R4	A0A1V6QNG1	A0A1V6Q1R4	A0A1V6QNG1	RNB domain-containing protein.	Uncharacterized protein.	0.549
A0A1V6Q1R4	PAN2	A0A1V6Q1R4	A0A1V6Q2M5	RNB domain-containing protein.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	0.610
A0A1V6Q6Y9	A0A1V6QAC8	A0A1V6Q6Y9	A0A1V6QAC8	3'-5' exonuclease domain-containing protein.	HRDC domain-containing protein.	0.622
A0A1V6QAC8	A0A1V6PTP0	A0A1V6QAC8	A0A1V6PTP0	HRDC domain-containing protein.	CCHC-type domain-containing protein.	0.577
A0A1V6QAC8	A0A1V6Q1R4	A0A1V6QAC8	A0A1V6Q1R4	HRDC domain-containing protein.	RNB domain-containing protein.	0.590
A0A1V6QAC8	A0A1V6Q6Y9	A0A1V6QAC8	A0A1V6Q6Y9	HRDC domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.622
A0A1V6QAC8	A0A1V6QE72	A0A1V6QAC8	A0A1V6QE72	HRDC domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.973
A0A1V6QAC8	A0A1V6QJP7	A0A1V6QAC8	A0A1V6QJP7	HRDC domain-containing protein.	RNB domain-containing protein.	0.749
A0A1V6QDE6	A0A1V6QI72	A0A1V6QDE6	A0A1V6QI72	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.950
A0A1V6QDE6	PAN2	A0A1V6QDE6	A0A1V6Q2M5	Exonuclease domain-containing protein.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	0.685
A0A1V6QE72	A0A1V6PTP0	A0A1V6QE72	A0A1V6PTP0	Uncharacterized protein; Belongs to the RNR ribonuclease family.	CCHC-type domain-containing protein.	0.497
A0A1V6QE72	A0A1V6QAC8	A0A1V6QE72	A0A1V6QAC8	Uncharacterized protein; Belongs to the RNR ribonuclease family.	HRDC domain-containing protein.	0.973
A0A1V6QE72	A0A1V6QG94	A0A1V6QE72	A0A1V6QG94	Uncharacterized protein; Belongs to the RNR ribonuclease family.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.866