10 items (Penicillium antarcticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PSQ8	Protein kinase domain-containing protein. (467 aa)
	A0A1V6PMQ5	Uncharacterized protein. (234 aa)
	A0A1V6PRM7	Uncharacterized protein. (296 aa)
	A0A1V6PPD3	Protein kinase domain-containing protein. (1147 aa)
	A0A1V6PWS2	WD_REPEATS_REGION domain-containing protein. (352 aa)
	A0A1V6PYH6	Uncharacterized protein. (353 aa)
	A0A1V6PZG8	Uncharacterized protein. (356 aa)
	A0A1V6Q506	G protein gamma domain-containing protein. (90 aa)
	A0A1V6Q6Y2	Uncharacterized protein. (447 aa)
	A0A1V6QEC1	Uncharacterized protein. (359 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PMQ5	A0A1V6PRM7	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PMQ5	A0A1V6PWS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
A0A1V6PMQ5	A0A1V6PYH6	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PMQ5	A0A1V6PZG8	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PMQ5	A0A1V6QEC1	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PRM7	A0A1V6PMQ5	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PRM7	A0A1V6PWS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.933
A0A1V6PRM7	A0A1V6Q506	Uncharacterized protein.	G protein gamma domain-containing protein.	0.786
A0A1V6PSQ8	A0A1V6PWS2	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.570
A0A1V6PSQ8	A0A1V6Q506	Protein kinase domain-containing protein.	G protein gamma domain-containing protein.	0.400
A0A1V6PWS2	A0A1V6PMQ5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
A0A1V6PWS2	A0A1V6PRM7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.933
A0A1V6PWS2	A0A1V6PSQ8	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.570
A0A1V6PWS2	A0A1V6PYH6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.989
A0A1V6PWS2	A0A1V6PZG8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.990
A0A1V6PWS2	A0A1V6Q506	WD_REPEATS_REGION domain-containing protein.	G protein gamma domain-containing protein.	0.985
A0A1V6PWS2	A0A1V6QEC1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.979
A0A1V6PYH6	A0A1V6PMQ5	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1V6PYH6	A0A1V6PWS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
A0A1V6PYH6	A0A1V6PZG8	Uncharacterized protein.	Uncharacterized protein.	0.924