(23 nodes) ncRNA transcription network (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QE75	Uncharacterized protein. (77 aa)
	A0A1V6QEP8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1248 aa)
	A0A1V6QGF6	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (250 aa)
	A0A1V6Q817	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (370 aa)
	A0A1V6Q6V0	Uncharacterized protein. (193 aa)
	A0A1V6Q671	Uncharacterized protein. (1090 aa)
	A0A1V6Q5M8	Uncharacterized protein. (966 aa)
	A0A1V6Q5L7	Uncharacterized protein. (1905 aa)
	A0A1V6Q4S0	Uncharacterized protein. (155 aa)
	A0A1V6Q370	SWIB domain-containing protein. (271 aa)
	A0A1V6Q1Y8	Uncharacterized protein. (886 aa)
	A0A1V6Q193	Uncharacterized protein. (74 aa)
	A0A1V6PZQ0	Plus3 domain-containing protein. (607 aa)
	A0A1V6PZ45	Uncharacterized protein. (449 aa)
	A0A1V6PU54	Uncharacterized protein. (292 aa)
	A0A1V6PU44	Uncharacterized protein. (601 aa)
	A0A1V6PTS0	Uncharacterized protein. (502 aa)
	A0A1V6PSL1	Uncharacterized protein. (979 aa)
	A0A1V6PI87	Uncharacterized protein. (197 aa)
	A0A1V6QMA4	B-block_TFIIIC domain-containing protein. (1804 aa)
	A0A1V6QHU0	Uncharacterized protein. (169 aa)
	A0A1V6QAM1	Histone domain-containing protein. (161 aa)
	A0A1V6QAJ7	RNA_pol_L_2 domain-containing protein. (137 aa)

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PSL1	A0A1V6PTS0	Uncharacterized protein.	Uncharacterized protein.	0.829
A0A1V6PSL1	A0A1V6Q193	Uncharacterized protein.	Uncharacterized protein.	0.659
A0A1V6PSL1	A0A1V6Q4S0	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A1V6PSL1	A0A1V6QAM1	Uncharacterized protein.	Histone domain-containing protein.	0.772
A0A1V6PSL1	A0A1V6QE75	Uncharacterized protein.	Uncharacterized protein.	0.658
A0A1V6PSL1	A0A1V6QEP8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.962
A0A1V6PTS0	A0A1V6PSL1	Uncharacterized protein.	Uncharacterized protein.	0.829
A0A1V6PTS0	A0A1V6PZ45	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A1V6PTS0	A0A1V6Q193	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PTS0	A0A1V6Q4S0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6PTS0	A0A1V6Q5M8	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A1V6PTS0	A0A1V6Q6V0	Uncharacterized protein.	Uncharacterized protein.	0.641
A0A1V6PTS0	A0A1V6QAJ7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.991
A0A1V6PTS0	A0A1V6QAM1	Uncharacterized protein.	Histone domain-containing protein.	0.686
A0A1V6PTS0	A0A1V6QE75	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6PTS0	A0A1V6QEP8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1V6PTS0	A0A1V6QHU0	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A1V6PTS0	A0A1V6QMA4	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.409
A0A1V6PU44	A0A1V6PZ45	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A1V6PZ45	A0A1V6PTS0	Uncharacterized protein.	Uncharacterized protein.	0.871